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Update nibabel requirement from <=5.3.1,>=2.5.1 to >=2.5.1,<=5.3.2 #1143

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@dependabot dependabot bot commented on behalf of github Oct 28, 2024

Updates the requirements on nibabel to permit the latest version.

Changelog

Sourced from nibabel's changelog.

5.3.2 (Wednesday 23 October 2024)

Bug-fix release in the 5.3.x series.

Bug fixes

  • Restore MRS extension type to Nifti1Extension to maintain backwards compatibility. (pr/1380) (CM)

5.3.1 (Tuesday 15 October 2024)

Bug-fix release in the 5.3.x series.

Bug fixes

  • Restore access to private attribute Nifti1Extension._content to unbreak subclasses that did not use public accessor methods. (pr/1378) (CM, reviewed by Basile Pinsard)
  • Remove test order dependency in test_api_validators (pr/1377) (CM)

5.3.0 (Tuesday 8 October 2024)

This release primarily adds support for Python 3.13 and Numpy 2.0.

NiBabel 6.0 will drop support for Numpy 1.x.

New features

  • Update NIfTI extension protocol to include .content : bytes, .text : str and .json() : dict properties/methods for accessing extension contents. Exceptions will be raised on .text and .json() if conversion fails. (pr/1336) (CM)

Enhancements

  • Ability to read data from many multiframe DICOM files that previously generated errors (pr/1340) (Brendan Moloney, reviewed by CM)
  • nib-nifti-dx now supports NIfTI-2 files with a --nifti2 flag (pr/1323) (CM)
  • Update :mod:nibabel.streamlines.tractogram to support ragged arrays. (pr/1291) (Serge Koudoro, reviewed by CM)
  • Filter numpy UserWarning on np.finfo(np.longdouble). This can occur on Windows systems, but it's done in the context of checking for the problem that is being warned against, so there's no need to be noisy. (pr/1310) (Joshua Newton, reviewed by CM)
  • Improve error message for for dicomwrapper errors in shape calculation (pr/1302) (YOH, reviewed by CM)
  • Support "flat" ASCII-encoded GIFTI DataArrays (pr/1298) (PM, reviewed by CM)

... (truncated)

Commits
  • 7b5060e Merge pull request #1380 from effigies/fix/mrs_type
  • 56446e5 Bump release date
  • af6b74c DOC: Update changelog to note that .json() is a method
  • 4c831cf DOC: Add changelog entry
  • 1158240 FIX: Set MRS type to Nifti1Extension for backwards compatibility
  • 96c8320 REL: 5.3.1
  • 6260442 Merge pull request #1378 from effigies/fix/legacy_nifti_extension_content
  • e97f572 FIX: Restore access to private attr Nifti1Extension._content
  • 1712cb0 TEST: Do not depend on test order in test_api_validators (#1377)
  • 249986b MNT: Update release notes translator
  • Additional commits viewable in compare view

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Updates the requirements on [nibabel](https://github.com/nipy/nibabel) to permit the latest version.
- [Release notes](https://github.com/nipy/nibabel/releases)
- [Changelog](https://github.com/nipy/nibabel/blob/master/Changelog)
- [Commits](nipy/nibabel@2.5.1...5.3.2)

---
updated-dependencies:
- dependency-name: nibabel
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added ignore-for-release maintenance issues related to versioning, dependencies, and other related elements labels Oct 28, 2024
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