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2 changes: 1 addition & 1 deletion ProLIF.html
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<div class="line">* <a class="reference external" href="https://zenodo.org/record/7332369">https://zenodo.org/record/7332369</a></div>
</div>
<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></div>
<div class="line"><strong>Description:</strong></div>
<div class="line"><em>Interaction Fingerprints for protein-ligand complexes and more</em></div>
</div>
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2 changes: 1 addition & 1 deletion _sources/ProLIF.rst.txt
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Expand Up @@ -40,7 +40,7 @@ The source code of ProLIF can be installed using the following:
:alt: ProLIF develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |ProLIF_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |ProLIF_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: ProLIF develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

2 changes: 1 addition & 1 deletion _sources/maintainingakit.rst.txt
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Expand Up @@ -7,7 +7,7 @@ Maintaining an MDAKit
.. note::
This section is still under construction. If you have topics you would
like to see covered here, please get in touch via
`MDAnalysis Github Discussion`_.
`MDAnalysis Github Discussions`_.

There are a variety of reasons a kit may behave unexpectedly after being
submitted to the registry. Apart from actively developing the kit, changes in
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10 changes: 5 additions & 5 deletions _sources/mdakits.rst.txt
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Expand Up @@ -218,7 +218,7 @@ Each of the MDAKits in the following table links to a page with more details abo
:alt: membrane-curvature develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |membrane-curvature_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |membrane-curvature_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: membrane-curvature develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

Expand Down Expand Up @@ -248,7 +248,7 @@ Each of the MDAKits in the following table links to a page with more details abo
:alt: pytim develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |pytim_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |pytim_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: pytim develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

Expand All @@ -267,7 +267,7 @@ Each of the MDAKits in the following table links to a page with more details abo
:alt: ProLIF develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |ProLIF_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |ProLIF_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: ProLIF develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

Expand Down Expand Up @@ -360,7 +360,7 @@ Each of the MDAKits in the following table links to a page with more details abo
:alt: zarrtraj develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |zarrtraj_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |zarrtraj_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: zarrtraj develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

Expand Down Expand Up @@ -393,7 +393,7 @@ Each of the MDAKits in the following table links to a page with more details abo
:alt: openmm-mdanalysis-reporter develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |openmm-mdanalysis-reporter_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |openmm-mdanalysis-reporter_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: openmm-mdanalysis-reporter develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

2 changes: 1 addition & 1 deletion _sources/membrane-curvature.rst.txt
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Expand Up @@ -42,7 +42,7 @@ The source code of membrane-curvature can be installed using the following:
:alt: membrane-curvature develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |membrane-curvature_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |membrane-curvature_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: membrane-curvature develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

2 changes: 1 addition & 1 deletion _sources/openmm-mdanalysis-reporter.rst.txt
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Expand Up @@ -42,7 +42,7 @@ The source code of openmm-mdanalysis-reporter can be installed using the followi
:alt: openmm-mdanalysis-reporter develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |openmm-mdanalysis-reporter_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |openmm-mdanalysis-reporter_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: openmm-mdanalysis-reporter develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

2 changes: 1 addition & 1 deletion _sources/pytim.rst.txt
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Expand Up @@ -41,7 +41,7 @@ The source code of pytim can be installed using the following:
:alt: pytim develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |pytim_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |pytim_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: pytim develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

2 changes: 1 addition & 1 deletion _sources/zarrtraj.rst.txt
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Expand Up @@ -45,7 +45,7 @@ The source code of zarrtraj can be installed using the following:
:alt: zarrtraj develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |zarrtraj_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |zarrtraj_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: zarrtraj develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

2 changes: 1 addition & 1 deletion maintainingakit.html
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<p class="admonition-title">Note</p>
<p>This section is still under construction. If you have topics you would
like to see covered here, please get in touch via
<a href="#id1"><span class="problematic" id="id2">`MDAnalysis Github Discussion`_</span></a>.</p>
<a class="reference external" href="https://github.com/MDAnalysis/mdanalysis/discussions">MDAnalysis Github Discussions</a>.</p>
</div>
<p>There are a variety of reasons a kit may behave unexpectedly after being
submitted to the registry. Apart from actively developing the kit, changes in
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10 changes: 5 additions & 5 deletions mdakits.html
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Expand Up @@ -213,7 +213,7 @@ <h1>Registry of MDAnalysis Toolkits (MDAKits)<a class="headerlink" href="#regist
<tr class="row-even"><td><p><a class="reference internal" href="membrane-curvature.html#membrane-curvature"><span class="std std-ref">membrane-curvature</span></a></p></td>
<td><p>membranes, curvature, molecular dynamics</p></td>
<td><p><a class="reference external" href="https://github.com/MDAnalysis/membrane-curvature/blob/main/AUTHORS">membrane-curvature authors</a></p></td>
<td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="membrane-curvature develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="membrane-curvature develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
<td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="membrane-curvature develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="membrane-curvature develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></p></td>
</tr>
<tr class="row-odd"><td><p><a class="reference internal" href="maicos.html#maicos"><span class="std std-ref">maicos</span></a></p></td>
<td><p>Molecular Dynamics, Confined Systems</p></td>
Expand All @@ -228,7 +228,7 @@ <h1>Registry of MDAnalysis Toolkits (MDAKits)<a class="headerlink" href="#regist
<tr class="row-odd"><td><p><a class="reference internal" href="pytim.html#pytim"><span class="std std-ref">pytim</span></a></p></td>
<td><p>Surface analysis, Intrinsic properties</p></td>
<td><p><a class="reference external" href="https://github.com/Marcello-Sega/pytim/blob/master/AUTHORS.md">pytim authors</a></p></td>
<td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="pytim develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="pytim develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
<td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="pytim develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="pytim develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></p></td>
</tr>
<tr class="row-even"><td><p><a class="reference internal" href="mdacli.html#mdacli"><span class="std std-ref">mdacli</span></a></p></td>
<td><p>command line interface, molecular-dynamics</p></td>
Expand All @@ -238,7 +238,7 @@ <h1>Registry of MDAnalysis Toolkits (MDAKits)<a class="headerlink" href="#regist
<tr class="row-odd"><td><p><a class="reference internal" href="ProLIF.html#prolif"><span class="std std-ref">ProLIF</span></a></p></td>
<td><p>drug-design, cheminformatics, molecular-dynamics</p></td>
<td><p>Cédric Bouysset</p></td>
<td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
<td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></p></td>
</tr>
<tr class="row-even"><td><p><a class="reference internal" href="mdakit-sasa.html#mdakit-sasa"><span class="std std-ref">mdakit-sasa</span></a></p></td>
<td><p>SASA, FreeSASA, ShrakeRupley, LeeRichards</p></td>
Expand Down Expand Up @@ -283,7 +283,7 @@ <h1>Registry of MDAnalysis Toolkits (MDAKits)<a class="headerlink" href="#regist
<tr class="row-even"><td><p><a class="reference internal" href="zarrtraj.html#zarrtraj"><span class="std std-ref">zarrtraj</span></a></p></td>
<td><p>streaming, trajectory, zarr, h5md, hdf5, AWS S3 Buckets, Google Cloud Buckets, Azure Blob Storage, Azure Data Lake</p></td>
<td><p><a class="reference external" href="https://github.com/Becksteinlab/zarrtraj/blob/main/AUTHORS.md">zarrtraj authors</a></p></td>
<td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="zarrtraj develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="zarrtraj develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
<td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="zarrtraj develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="zarrtraj develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></p></td>
</tr>
<tr class="row-odd"><td><p><a class="reference internal" href="mda-tui.html#mda-tui"><span class="std std-ref">mda-tui</span></a></p></td>
<td><p>transformations, TUI</p></td>
Expand All @@ -298,7 +298,7 @@ <h1>Registry of MDAnalysis Toolkits (MDAKits)<a class="headerlink" href="#regist
<tr class="row-odd"><td><p><a class="reference internal" href="openmm-mdanalysis-reporter.html#openmm-mdanalysis-reporter"><span class="std std-ref">openmm-mdanalysis-reporter</span></a></p></td>
<td><p>OpenMM, Reporters</p></td>
<td><p><a class="reference external" href="https://github.com/sef43/openmm-mdanalysis-reporter/blob/main/AUTHORS.md">openmm-mdanalysis-reporter authors</a></p></td>
<td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="openmm-mdanalysis-reporter develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="openmm-mdanalysis-reporter develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></p></td>
<td><p><a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="openmm-mdanalysis-reporter develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="openmm-mdanalysis-reporter develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></p></td>
</tr>
</tbody>
</table>
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2 changes: 1 addition & 1 deletion membrane-curvature.html
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<div class="line">* <a class="reference external" href="https://zenodo.org/records/5553452">https://zenodo.org/records/5553452</a></div>
</div>
<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="membrane-curvature develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="membrane-curvature develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="membrane-curvature develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></div>
<div class="line"><strong>Description:</strong></div>
<div class="line"><em>Tool to calculate the Gaussian and mean curvature of membranes from Molecular Dynamics simulations.</em></div>
</div>
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2 changes: 1 addition & 1 deletion openmm-mdanalysis-reporter.html
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<div class="line">⚖️ <strong>License:</strong> MIT</div>
<div class="line">🔑 <strong>Keywords:</strong> OpenMM, Reporters</div>
<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="openmm-mdanalysis-reporter develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="openmm-mdanalysis-reporter develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="openmm-mdanalysis-reporter develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></div>
<div class="line"><strong>Description:</strong></div>
<div class="line"><em>MDAnalysis based reporters for OpenMM</em></div>
</div>
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<div class="line">* <a class="reference external" href="https://onlinelibrary.wiley.com/doi/epdf/10.1002/jcc.25384">https://onlinelibrary.wiley.com/doi/epdf/10.1002/jcc.25384</a></div>
</div>
<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="pytim develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="pytim develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="pytim develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></div>
<div class="line"><strong>Description:</strong></div>
<div class="line"><em>Provides several methods for the detection of fluid interfaces and analysis of their properties.</em></div>
</div>
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<div class="line">* <a class="reference external" href="https://doi.org/10.25080/majora-1b6fd038-005">https://doi.org/10.25080/majora-1b6fd038-005</a></div>
</div>
<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="zarrtraj develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="zarrtraj develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="zarrtraj develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></div>
<div class="line"><strong>Description:</strong></div>
<div class="line"><em>Zarrtraj is a kit that provides the ability to stream &amp; analyze H5MD trajectories from cloud storage.</em></div>
</div>
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