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entropy with isprobvec check #865
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Original file line number | Diff line number | Diff line change | ||||
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@@ -726,21 +726,26 @@ zscore(X::AbstractArray{<:Real}, dim::Int) = ((μ, σ) = mean_and_std(X, dim); z | |||||
############################# | ||||||
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""" | ||||||
entropy(p, [b]) | ||||||
isprobvec(p::AbstractVector{<:Real}) -> Bool | ||||||
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Checks whether `p` is a probability vector, i.e. p[i] >= 0 for each index i, and sum(p) ≈ 1. | ||||||
Taken from `Distributions.isprobvec`.""" | ||||||
isprobvec(p::AbstractVector{<:Real}) = all(x -> x ≥ zero(x), p) && isapprox(sum(p), one(eltype(p))) | ||||||
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""" | ||||||
entropy(p::AbstractVector{<:Real}, [b]; check::Bool=true) | ||||||
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Compute the entropy of a collection of probabilities `p`, | ||||||
optionally specifying a real number `b` such that the entropy is scaled by `1/log(b)`. | ||||||
Elements with probability 0 or 1 add 0 to the entropy. | ||||||
""" | ||||||
function entropy(p) | ||||||
if isempty(p) | ||||||
throw(ArgumentError("empty collections are not supported since they do not " * | ||||||
"represent proper probability distributions")) | ||||||
end | ||||||
return -sum(xlogx, p) | ||||||
end | ||||||
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entropy(p, b::Real) = entropy(p) / log(b) | ||||||
With `check=false` disable a check whether `p` is indeed a probability vector, | ||||||
see `StatsBase.isprobvec`.""" | ||||||
function entropy(p::AbstractVector{<:Real}; check::Bool = true) | ||||||
check && (isprobvec(p) || throw(ArgumentError("Not a proper probability distribution"))) | ||||||
return -sum(xlogx, p) | ||||||
end | ||||||
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entropy(p, b::Real; check::Bool = true) = entropy(p; check) / log(b) | ||||||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Should we check
Suggested change
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""" | ||||||
renyientropy(p, α) | ||||||
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It would be nice to support tolerances here due to floating point inaccuracies but I don't see a nice way to forward them to this function.