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Basecall Configuration

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JoshLoecker edited this page Mar 17, 2021 · 2 revisions

Below is a list of configurations available in Guppy Basecaller as of Tuesday, March 16, 2021
If you would like to use one of these configurations, simply copy the config_name and add .cfg after it.
Enter this name into the basecall: configuration section of the config.yaml file
This list was taken from the command guppy_basecaller --print_workflows

flowcell kit barcoding config_name model version
FLO-MIN107 SQK-DCS108 dna_r9.5_450bps unknown
FLO-MIN107 SQK-DCS109 dna_r9.5_450bps unknown
FLO-MIN107 SQK-LRK001 dna_r9.5_450bps unknown
FLO-MIN107 SQK-LSK108 dna_r9.5_450bps unknown
FLO-MIN107 SQK-LSK109 dna_r9.5_450bps unknown
FLO-MIN107 SQK-LSK308 dna_r9.5_450bps unknown
FLO-MIN107 SQK-LSK309 dna_r9.5_450bps unknown
FLO-MIN107 SQK-LSK319 dna_r9.5_450bps unknown
FLO-MIN107 SQK-LWP001 dna_r9.5_450bps unknown
FLO-MIN107 SQK-PCS108 dna_r9.5_450bps unknown
FLO-MIN107 SQK-PCS109 dna_r9.5_450bps unknown
FLO-MIN107 SQK-PSK004 dna_r9.5_450bps unknown
FLO-MIN107 SQK-RAD002 dna_r9.5_450bps unknown
FLO-MIN107 SQK-RAD003 dna_r9.5_450bps unknown
FLO-MIN107 SQK-RAD004 dna_r9.5_450bps unknown
FLO-MIN107 SQK-RAS201 dna_r9.5_450bps unknown
FLO-MIN107 SQK-RLI001 dna_r9.5_450bps unknown
FLO-MIN107 VSK-VBK001 dna_r9.5_450bps unknown
FLO-MIN107 VSK-VSK001 dna_r9.5_450bps unknown
FLO-MIN107 VSK-VSK002 dna_r9.5_450bps unknown
FLO-MIN107 SQK-LWB001 included dna_r9.5_450bps unknown
FLO-MIN107 SQK-PBK004 included dna_r9.5_450bps unknown
FLO-MIN107 SQK-RAB201 included dna_r9.5_450bps unknown
FLO-MIN107 SQK-RAB204 included dna_r9.5_450bps unknown
FLO-MIN107 SQK-RBK001 included dna_r9.5_450bps unknown
FLO-MIN107 SQK-RBK004 included dna_r9.5_450bps unknown
FLO-MIN107 SQK-RLB001 included dna_r9.5_450bps unknown
FLO-MIN107 SQK-RPB004 included dna_r9.5_450bps unknown
FLO-MIN107 VSK-VMK001 included dna_r9.5_450bps unknown
FLO-MIN107 VSK-VMK002 included dna_r9.5_450bps unknown
FLO-FLG001 SQK-CAS109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-CS9109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-DCS108 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-DCS109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-LRK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-LSK108 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-LSK109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-LSK109-XL dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-LSK110 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-LSK110-XL dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-LWP001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-PCS108 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-PCS109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-PCS110 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-PRC109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-PSK004 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RAD002 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RAD003 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RAD004 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RAS201 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RLI001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-ULK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 VSK-VBK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 VSK-VSK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 VSK-VSK002 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 VSK-VSK003 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-16S024 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-NBD110-24 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-NBD110-96 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-PCB109 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-PCB110 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RBK001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RBK004 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RBK096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RLB001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-LWB001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-PBK004 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RAB201 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RAB204 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 SQK-RPB004 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 VSK-VMK001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 VSK-VMK002 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLG001 VSK-VMK003 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-CAS109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-CS9109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-DCS108 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-DCS109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-LRK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-LSK108 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-LSK109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-LSK109-XL dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-LSK110 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-LSK110-XL dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-LWP001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-PCS108 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-PCS109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-PCS110 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-PRC109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-PSK004 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RAD002 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RAD003 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RAD004 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RAS201 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RLI001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-ULK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 VSK-VBK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 VSK-VSK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 VSK-VSK002 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 VSK-VSK003 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-16S024 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-NBD110-24 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-NBD110-96 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-PCB109 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-PCB110 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RBK001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RBK004 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RBK096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RLB001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-LWB001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-PBK004 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RAB201 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RAB204 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 SQK-RPB004 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 VSK-VMK001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 VSK-VMK002 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-FLGOP1 VSK-VMK003 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-CAS109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-CS9109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-DCS108 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-DCS109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-LRK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-LSK108 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-LSK109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-LSK109-XL dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-LSK110 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-LSK110-XL dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-LWP001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-PCS108 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-PCS109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-PCS110 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-PRC109 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-PSK004 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RAD002 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RAD003 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RAD004 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RAS201 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RLI001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-ULK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 VSK-VBK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 VSK-VSK001 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 VSK-VSK002 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 VSK-VSK003 dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 OND-SQK-LP0096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-16S024 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-NBD110-24 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-NBD110-96 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-PCB109 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-PCB110 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RBK001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RBK004 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RBK096 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RLB001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-LWB001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-PBK004 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RAB201 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RAB204 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 SQK-RPB004 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 VSK-VMK001 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 VSK-VMK002 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN106 VSK-VMK003 included dna_r9.4.1_450bps_hac 2020-06-10_dna_r9.4.1_minion_384_ae8125ea
FLO-MIN110 SQK-CAS109 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-CS9109 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-DCS108 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-DCS109 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-LRK001 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-LSK108 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-LSK109 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-LSK109-XL dna_r10_450bps_hac unknown
FLO-MIN110 SQK-LSK110 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-LSK110-XL dna_r10_450bps_hac unknown
FLO-MIN110 SQK-LWP001 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-PCS108 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-PCS109 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-PCS110 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-PRC109 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-PSK004 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-RAD002 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-RAD003 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-RAD004 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-RAS201 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-RLI001 dna_r10_450bps_hac unknown
FLO-MIN110 VSK-VBK001 dna_r10_450bps_hac unknown
FLO-MIN110 VSK-VSK001 dna_r10_450bps_hac unknown
FLO-MIN110 VSK-VSK002 dna_r10_450bps_hac unknown
FLO-MIN110 SQK-16S024 included dna_r10_450bps_hac unknown
FLO-MIN110 SQK-PCB109 included dna_r10_450bps_hac unknown
FLO-MIN110 SQK-PCB110 included dna_r10_450bps_hac unknown
FLO-MIN110 SQK-RBK001 included dna_r10_450bps_hac unknown
FLO-MIN110 SQK-RBK004 included dna_r10_450bps_hac unknown
FLO-MIN110 SQK-RLB001 included dna_r10_450bps_hac unknown
FLO-MIN110 SQK-LWB001 included dna_r10_450bps_hac unknown
FLO-MIN110 SQK-PBK004 included dna_r10_450bps_hac unknown
FLO-MIN110 SQK-RAB201 included dna_r10_450bps_hac unknown
FLO-MIN110 SQK-RAB204 included dna_r10_450bps_hac unknown
FLO-MIN110 SQK-RPB004 included dna_r10_450bps_hac unknown
FLO-MIN110 VSK-VMK001 included dna_r10_450bps_hac unknown
FLO-MIN110 VSK-VMK002 included dna_r10_450bps_hac unknown
FLO-FLG111 SQK-CAS109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-CS9109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-DCS108 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-DCS109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-LRK001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-LSK108 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-LSK109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-LSK109-XL dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-LSK110 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-LSK110-XL dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-LWP001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-PCS108 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-PCS109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-PCS110 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-PRC109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-PSK004 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RAD002 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RAD003 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RAD004 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RAS201 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RLI001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-ULK001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 VSK-VBK001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 VSK-VSK001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 VSK-VSK002 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 VSK-VSK003 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-16S024 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-PCB109 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-PCB110 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RBK001 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RBK004 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RBK096 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RLB001 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-LWB001 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-PBK004 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RAB201 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RAB204 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 SQK-RPB004 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 VSK-VMK001 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 VSK-VMK002 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-FLG111 VSK-VMK003 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-CAS109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-CS9109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-DCS108 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-DCS109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-LRK001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-LSK108 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-LSK109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-LSK109-XL dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-LSK110 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-LSK110-XL dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-LWP001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-PCS108 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-PCS109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-PCS110 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-PRC109 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-PSK004 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RAD002 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RAD003 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RAD004 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RAS201 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RLI001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-ULK001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 VSK-VBK001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 VSK-VSK001 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 VSK-VSK002 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 VSK-VSK003 dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-16S024 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-PCB109 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-PCB110 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RBK001 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RBK004 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RBK096 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RLB001 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-LWB001 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-PBK004 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RAB201 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RAB204 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 SQK-RPB004 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 VSK-VMK001 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 VSK-VMK002 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-MIN111 VSK-VMK003 included dna_r10.3_450bps_hac 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-PRO111 SQK-LSK109 dna_r10.3_450bps_hac_prom 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-PRO111 SQK-LSK109-XL dna_r10.3_450bps_hac_prom 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-PRO111 SQK-LSK110 dna_r10.3_450bps_hac_prom 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-PRO111 SQK-LSK110-XL dna_r10.3_450bps_hac_prom 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-PRO111 SQK-DCS109 dna_r10.3_450bps_hac_prom 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-PRO111 SQK-PCS109 dna_r10.3_450bps_hac_prom 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-PRO111 SQK-PCS110 dna_r10.3_450bps_hac_prom 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-PRO111 SQK-PRC109 dna_r10.3_450bps_hac_prom 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-PRO111 SQK-PCB109 included dna_r10.3_450bps_hac_prom 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-PRO111 SQK-PCB110 included dna_r10.3_450bps_hac_prom 2020-06-10_dna_r10.3_minion_384_cfa9b77e
FLO-PRO001 SQK-RNA002 rna_r9.4.1_70bps_hac_prom 2020-09-21_rna_r9.4.1_promethion_256_855130ab
FLO-PRO002 SQK-RNA002 rna_r9.4.1_70bps_hac_prom 2020-09-21_rna_r9.4.1_promethion_256_855130ab
FLO-PROOP2 SQK-RNA002 rna_r9.4.1_70bps_hac_prom 2020-09-21_rna_r9.4.1_promethion_256_855130ab
FLO-PRO001 SQK-LSK109 dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO001 SQK-LSK109-XL dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO001 SQK-DCS109 dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO001 SQK-PCS109 dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO001 SQK-PCS110 dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO001 SQK-PRC109 dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO001 SQK-PCB109 included dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO001 SQK-PCB110 included dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO002 SQK-LSK109 dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO002 SQK-LSK109-XL dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO002 SQK-DCS109 dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO002 SQK-PCS109 dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO002 SQK-PCS110 dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO002 SQK-PRC109 dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO002 SQK-PCB109 included dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PRO002 SQK-PCB110 included dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7
FLO-PROOP2 SQK-LSK109 dna_r9.4.1_450bps_hac_prom 2020-06-12_dna_r9.4.1_promethion_384_9fb06ae7

Table of Contents

  1. Home
  2. Usage
  3. Installation
  4. Parameters & Configuration Files
  5. Running the Pipeline
  6. Updating the Pipeline
  7. Guppy in a Singularity Container
  8. Example SLURM Scripts
  9. Sample Data
    a. Expected Outcomes
    b. Potential Errors
  10. Notes to Future Maintainers
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