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ImageGuidedTherapyLab/anonymizationtransfer
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1. use slicer to build one db with PHI * build db with 'copy' to build file paths studyuid/seriesuid/sopinstance /opt/apps/slicer/Slicer-4.10.2-linux-amd64/Slicer --no-splash --python-script ./builddcmdb.py copy /home/fuentes/dbdirectory /home/fuentes/inputimages /mnt/c/Program\ Files/Slicer\ 4.10.2/Slicer.exe --no-splash --python-script anonymizationtransfer/builddcmdb.py copy "C:\Users\dtfuentes\anontest\dbdirectory" "C:\Users\dtfuentes\anontest\inputimages" 2. run anonymization https://mircwiki.rsna.org/index.php?title=The_DicomAnonymizerTool Run the mirc.rsna.org/DicomAnonymizerTool-installer.jar to install java -jar DAT/DicomAnonymizerTool/DAT.jar -in /mnt/c/Users/dtfuentes/anontest/dbdirectory/dicom phi -out /mnt/c/Users/dtfuentes/anontest/dbanon/dicom -da 3. use slicer to build a second db without PHI /opt/apps/slicer/Slicer-4.10.2-linux-amd64/Slicer --no-splash --python-script ./builddcmdb.py link /home/fuentes/cmdanon /home/fuentes/cmdanon/dicom /mnt/c/Program\ Files/Slicer\ 4.10.2/Slicer.exe --no-splash --python-script anonymizationtransfer/builddcmdb.py link "C:\Users\dtfuentes\anontest\dbanon" "C:\Users\dtfuentes\anontest\dbanon\dicom" 4. from python join on studyuid/seriesuid/sopinstance to build anonymization key python anonkey.py
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