Skip to content
This repository has been archived by the owner on Jul 17, 2023. It is now read-only.

Issues: Illumina/manta

128 Open 174 Closed
128 Open 174 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Installation issue (possible bug - library_version_type/ libdeflate should be from source)
#313 opened Jul 13, 2023 by hongsilv
Why is START and END the same in the diploidSV.vcf.gz?
#312 opened Jul 7, 2023 by robertzeibich
Failure to call well-known fusions on WES samples
#311 opened May 24, 2023 by maximus3219
What is the benefit of the stats folder? Are some structural variants more relevant than others in the candidateSV.vcf file??
#310 opened Apr 25, 2023 by robertzeibich
Manta currently handles paired-end (FR) reads only.
#309 opened Apr 13, 2023 by hanqin580230
2
--exome: command not found & bin/configManta.py: No such file or directory
#307 opened Mar 25, 2023 by yr542
Get STRAND INFO in the vcf output
#306 opened Mar 24, 2023 by Sreelekshmi-291
Problem finding .bed.gz.tbi index file with --callRegions
#305 opened Mar 6, 2023 by lunalvan
merge the two lines translocation(BND) records into one line
#303 opened Dec 3, 2022 by Qijie0615
Population-scale SV merging does not produce 0/0 genotypes
#302 opened Nov 29, 2022 by DomManou
No reads passing filters for dragmap-aligned bams
#299 opened Oct 18, 2022 by Rohan-Abraham
Error when running debugSingleSV
#298 opened Oct 14, 2022 by wongwsw
Depth based exclusion process question
#297 opened Oct 12, 2022 by hayeon-pak
Errors in MantaDemoAnalysis.py
#296 opened Sep 29, 2022 by HeejunJang
Know SV can not detected by manta
#294 opened Sep 14, 2022 by iskysinger
3
isEmail function in run script makes Manta hang
#293 opened Sep 7, 2022 by holtgrewe
denovo_scoring.py extension - failure to read sample IDs in VCF
#292 opened Sep 5, 2022 by McClatcheyM
4
[Question] How does Manta handle PCR duplicates?
#291 opened Aug 31, 2022 by tbaker18
1
[Question]: Is ARM64 architecture supported ?
#289 opened Jul 18, 2022 by julien-faye
1
Versioning on conda
#287 opened Jun 15, 2022 by dmaziec
1
The orientation of structural variations
#286 opened May 26, 2022 by cauliyang
Split and spanning reads
#285 opened May 25, 2022 by dmaziec
1
Fail to open existing file
#283 opened Mar 14, 2022 by elcortegano
2
SV calling on chrMT
#281 opened Jan 7, 2022 by marc-sturm
Does Manta support 10x linked-read sorted bam files?
#280 opened Dec 6, 2021 by goldpm1
3
ProTip! Add no:assignee to see everything that’s not assigned.