·
34 commits
to release
since this release
First full release.
- MA can now recognize short inversions too. A z-drop based heuristic is used as algorithmic
approach for inversion recognition.
Regions between seeds showing a z-drop are reverse complemented and realigned using DP.
If the DP-score is sufficiently high, the region is accepted as inversion and a supplementary alignment
is provided using the computed DP-path. Similar approaches are used by other aligners too. - Minor bug fixes.