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More memory for riot.
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balhoff committed May 16, 2024
1 parent f3c8240 commit 38e91c0
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,7 @@ RG=$(RG_ENV) relation-graph
BG_RUNNER=JAVA_OPTS="-Xmx80G -XX:+UseParallelGC" blazegraph-runner
JVM_ARGS=JVM_ARGS="-Xmx180G -XX:+UseParallelGC"
ARQ=$(JVM_ARGS) arq
RIOT=$(JVM_ARGS) riot
BIOLINK=3.0.0

NONBASE_ONTOLOGIES := $(shell cat "ontologies.txt")
Expand Down Expand Up @@ -204,7 +205,7 @@ ontologies-merged.ttl: mirror
remove --term 'owl:Nothing' --trim true --preserve-structure false \
query --update build-sparql/filter-bad-uri-values.ru \
reason -r ELK -D debug.ofn -o $@.owl &&\
riot -q --nocheck --output=turtle $@.owl >$@
$(RIOT) -q --nocheck --output=turtle $@.owl >$@

ontologies-merged.ofn.gz: ontologies-merged.ttl
$(ROBOT) convert -i $< -o ontologies-merged.ofn && gzip ontologies-merged.ofn
Expand All @@ -219,7 +220,7 @@ rdf.facts: properties-redundant.nt
sed 's/ /\t/' <$< | sed 's/ /\t/' | sed 's/ \.$$//' >$@

ontrdf.facts: ontologies-merged.ttl
riot -q --nocheck --output=ntriples $< | sed 's/ /\t/' | sed 's/ /\t/' | sed 's/ \.$$//' >$@
$(RIOT) -q --nocheck --output=ntriples $< | sed 's/ /\t/' | sed 's/ /\t/' | sed 's/ \.$$//' >$@

properties-nonredundant.nt: rdf.facts ontrdf.facts prune.dl
souffle -c prune.dl && mv nonredundant.csv $@
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