Stable release of PEPMatch 1.0. Waited for publication which is here
Since v0.9.0:
- Added
ParallelMatcherwhich will optimize a specified number of CPU cores to run jobs in parallel - Removed dependency on
Levenshteinpackage; wrote own C extension for the Hamming distance portion - New benchmarking script and revamped the milk allergen benchmark to reflect data from this paper
- Simplified all tests, which will run much faster for each commit
- Many bugs related to the output of the tool for each format
- Added .tsv output support
- Ruff linter to maintain proper code style