Update HLA #114
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| name: Update HLA | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 0 * * 0' | |
| jobs: | |
| refresh: | |
| name: Refresh HLA sequences | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.8' | |
| - name: Refresh HLA sequences | |
| id: check_files | |
| run: | | |
| make refresh-hla-seqs | |
| FNAME=$(git diff --name-only ontology/chain-sequence.tsv) | |
| if [[ $FNAME == ontology/chain-sequence.tsv ]]; then | |
| echo "::set-output name=has_change::true" | |
| else | |
| echo "::set-output name=has_change::false" | |
| fi | |
| - name: Create commit | |
| id: create_commit | |
| if: steps.check_files.outputs.has_change == 'true' | |
| run: | | |
| git config user.name 'github-actions' | |
| git config user.email '41898282+github-actions[bot]@users.noreply.github.com' | |
| git commit -am "$(date '+%Y-%m-%d') HLA refresh" | |
| echo "::set-output name=date::$(date +'%Y-%m-%d')" | |
| - name: Create pull request | |
| if: steps.check_files.outputs.has_change == 'true' | |
| uses: peter-evans/create-pull-request@v3 | |
| with: | |
| title: ${{ steps.create_commit.outputs.date }} HLA Sequence Update | |
| branch: ${{ steps.create_commit.outputs.date }}-hla-update | |
| reviewers: | | |
| jamesaoverton | |
| rvita | |
| body: | | |
| Refresh HLA sequences (auto-generated by [create-pull-request](https://github.com/peter-evans/create-pull-request)) |