AmiciObjective/PEtab import: Fix plist #1493
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## develop #1493 +/- ##
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+ Coverage 82.74% 82.75% +0.01%
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Files 163 163
Lines 13892 13903 +11
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+ Hits 11495 11506 +11
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For further background, see ICB-DCM#1448. We don't have to compute the full gradient in every model simulation. Some entries might not be required because of fixed parameter or some condition-specific objective parameter mapping. The former was supported (however, not tested), the latter was not supported. Now both are tested an supported. There was no good way to communicate the fixed parameters to AmiciCalculator where ExpData.plist gets set. Passing this information is currently only possible through the parameter mapping, based on which the required sensitivities are determined. Therefore, in addition to the general parameter mapping, there is now a parameter mapping that accounts for the fixed parameters. Not sure what could be a more elegant way to handle that.
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PaulJonasJost
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Oct 23, 2024
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For further background, see #1448.
We don't have to compute the full gradient in every model simulation. Some entries might not be required because of fixed parameter or some condition-specific objective parameter mapping. The former was supported (however, not tested), the latter was not supported. Now both are tested an supported.
There was no good way to communicate the fixed parameters to AmiciCalculator where ExpData.plist gets set. Passing this information is currently only possible through the parameter mapping, based on which the required sensitivities are determined. Therefore, in addition to the general parameter mapping, there is now a parameter mapping that accounts for the fixed parameters. Not sure what could be a more elegant way to handle that.