Change doc site links #76
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v1 | |
| with: | |
| fetch-depth: 1 | |
| - name: Set up Python 3.7 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.7 | |
| - name: Install htslib dependencies | |
| run: sudo apt-get install libcurl4-openssl-dev | |
| - name: Install Poetry | |
| uses: snok/[email protected] | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| #---------------------------------------------- | |
| # load cached venv if cache exists | |
| #---------------------------------------------- | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v2 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} | |
| #---------------------------------------------- | |
| # install dependencies if cache does not exist | |
| #---------------------------------------------- | |
| - name: Install dependencies | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction --no-root | |
| #---------------------------------------------- | |
| # install your root project, if required | |
| #---------------------------------------------- | |
| - name: Install library | |
| run: poetry install --no-interaction | |
| - name: Code Quality | |
| run: | | |
| source .venv/bin/activate | |
| black . --check | |
| - name: Test with pytest | |
| run: | | |
| source .venv/bin/activate | |
| pytest -n 2 --cov . --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: true | |
| path_to_write_report: ./codecov_report.gz | |
| verbose: true |