switch to building HDF5 with CMake #4
Workflow file for this run
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| name: "CodeQL" | |
| on: | |
| push: | |
| branches: [ "develop" ] | |
| pull_request: | |
| branches: [ "develop" ] | |
| schedule: | |
| - cron: "16 7 * * 0" | |
| jobs: | |
| analyze: | |
| name: Analyze | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| permissions: | |
| actions: read | |
| contents: read | |
| security-events: write | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| language: [ cpp ] | |
| steps: | |
| - name: Checkout submodule Argobots | |
| uses: actions/[email protected] | |
| with: | |
| submodules: 'true' | |
| - name: Checkout HDF5 latest | |
| uses: actions/[email protected] | |
| with: | |
| repository: HDFGroup/hdf5 | |
| path: hdf5 | |
| - name: Dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libtool libopenmpi-dev zlib1g-dev python3 cmake | |
| - name: Configure Async VOL (install dependencies) | |
| run: | | |
| mydir="$PWD" | |
| export HDF5_DIR=$mydir/hdf5/install | |
| export ABT_DIR=$mydir/argobots | |
| export VOL_DIR=$mydir/vol-async/install | |
| mkdir $HDF5_DIR | |
| # Compile HDF5 | |
| cd hdf5 | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=$HDF5_DIR -DHDF5_ENABLE_PARALLEL=ON -DHDF5_ENABLE_THREADSAFE=ON \ | |
| -DALLOW_UNSUPPORTED=ON -DBUILD_TESTING=OFF -DHDF5_BUILD_HL_LIB=OFF \ | |
| -DHDF5_BUILD_EXAMPLES=OFF -DHDF5_BUILD_FORTRAN=OFF -DCMAKE_C_COMPILER=mpicc .. | |
| make -j && make install | |
| # Compile Argobots | |
| cd $ABT_DIR | |
| ./autogen.sh | |
| ./configure --prefix=$ABT_DIR | |
| make && make install | |
| # Configure Asynchronous VOL connector | |
| pwd | |
| cd ../ | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=$VOL_DIR -DCMAKE_C_COMPILER=mpicc .. | |
| - name: Initialize CodeQL | |
| uses: github/codeql-action/init@v3 | |
| with: | |
| languages: ${{ matrix.language }} | |
| config-file: ./.github/codeql.yml | |
| queries: +security-and-quality | |
| - name: Build Async VOL | |
| run: | | |
| cd build | |
| make && make install | |
| ctest -V . | |
| - name: Perform CodeQL Analysis | |
| uses: github/codeql-action/analyze@v3 | |
| with: | |
| category: "/language:${{ matrix.language }}" |