Enable testing on Github Actions (#841) #1120
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: netcdf-versions | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| paths-ignore: | |
| - README.md | |
| pull_request: | |
| branches: | |
| - develop | |
| paths-ignore: | |
| - README.md | |
| defaults: | |
| run: | |
| shell: bash -exo pipefail {0} | |
| jobs: | |
| netcdf-build-and-test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| netcdf_version: [4.8.0] | |
| steps: | |
| - name: install-dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libmpich-dev libpng-dev libjpeg-dev | |
| - name: cache-netcdf | |
| id: cache-netcdf | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/netcdf | |
| key: netcdf-c-${{ matrix.netcdf_version }}-${{ runner.os }}4 | |
| - name: build-hdf5 | |
| if: steps.cache-netcdf.outputs.cache-hit != 'true' | |
| run: | | |
| export CC=mpicc | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7.tar.gz &> /dev/null | |
| tar -xzf hdf5-1.10.7.tar.gz | |
| pushd hdf5-1.10.7 | |
| ./configure --prefix=${HOME}/netcdf --enable-parallel --disable-tools --disable-fortran --disable-cxx --disable-shared | |
| make -j2 | |
| make install | |
| - name: build-netcdf-c | |
| if: steps.cache-netcdf.outputs.cache-hit != 'true' | |
| run: | | |
| export CC=mpicc | |
| export CPPFLAGS=-I${HOME}/netcdf/include | |
| export LDFLAGS=-L${HOME}/netcdf/lib | |
| wget https://github.com/Unidata/netcdf-c/archive/refs/tags/v${{ matrix.netcdf_version }}.tar.gz &> /dev/null | |
| tar -xzf v${{ matrix.netcdf_version }}.tar.gz | |
| cd netcdf-c-${{ matrix.netcdf_version }} | |
| ./configure --prefix=${HOME}/netcdf --disable-dap --disable-utilities --disable-shared | |
| make -j2 | |
| make install | |
| - name: build-netcdf-fortran | |
| if: steps.cache-netcdf.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| export PATH="${HOME}/netcdf/bin:$PATH" | |
| export CC=mpicc | |
| export FC=mpifort | |
| export CPPFLAGS=-I${HOME}/netcdf/include | |
| export LDFLAGS=-L${HOME}/netcdf/lib | |
| export LIBS=`nc-config --libs` | |
| wget https://github.com/Unidata/netcdf-fortran/archive/v4.5.3.tar.gz &> /dev/null | |
| tar -xzf v4.5.3.tar.gz | |
| pushd netcdf-fortran-4.5.3 | |
| ./configure --prefix=${HOME}/netcdf --disable-shared | |
| make -j2 | |
| make install | |
| - name: cache-esmf | |
| id: cache-esmf | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/esmf | |
| key: esmf-8.2.0-${{ runner.os }}-netcdf-${{ matrix.netcdf_version }}3 | |
| - name: build-esmf | |
| if: steps.cache-esmf.outputs.cache-hit != 'true' | |
| run: | | |
| pushd ~ | |
| export ESMF_DIR=~/esmf-ESMF_8_2_0 | |
| wget https://github.com/esmf-org/esmf/archive/ESMF_8_2_0.tar.gz &> /dev/null | |
| tar zxf ESMF_8_2_0.tar.gz | |
| cd esmf-ESMF_8_2_0 | |
| export ESMF_COMM=mpich3 | |
| export ESMF_INSTALL_BINDIR=bin | |
| export ESMF_INSTALL_LIBDIR=lib | |
| export ESMF_INSTALL_MODDIR=mod | |
| export ESMF_COMPILER=gfortran | |
| export ESMF_INSTALL_PREFIX=~/esmf | |
| export ESMF_NETCDF=split | |
| export ESMF_NETCDF_INCLUDE=${HOME}/netcdf/include | |
| export ESMF_NETCDF_LIBPATH=${HOME}/netcdf/lib | |
| export ESMF_NETCDF_LIBS="-lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz" | |
| make -j2 | |
| make install | |
| - name: cache-jasper | |
| id: cache-jasper | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/jasper | |
| key: jasper-2.0.25-${{ runner.os }}3 | |
| - name: build-jasper | |
| if: steps.cache-jasper.outputs.cache-hit != 'true' | |
| run: | | |
| wget https://github.com/jasper-software/jasper/archive/version-2.0.25.tar.gz &> /dev/null | |
| tar zxf version-2.0.25.tar.gz | |
| cd jasper-version-2.0.25 | |
| mkdir build-jasper && cd build-jasper | |
| cmake .. -DCMAKE_INSTALL_PREFIX=~/jasper -DJAS_ENABLE_SHARED=OFF | |
| make -j2 | |
| make install | |
| - name: cache-nceplibs | |
| id: cache-nceplibs | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/nceplibs | |
| key: nceplibs-1.4.0-${{ runner.os }}-netcdf-${{ matrix.netcdf_version }}3 | |
| - name: build-nceplibs | |
| if: steps.cache-nceplibs.outputs.cache-hit != 'true' | |
| run: | | |
| wget https://github.com/NOAA-EMC/NCEPLIBS/archive/v1.4.0.tar.gz &> /dev/null | |
| tar zxf v1.4.0.tar.gz | |
| cd NCEPLIBS-1.4.0 | |
| export ESMFMKFILE=~/esmf/lib/esmf.mk | |
| mkdir build && cd build | |
| cmake .. -DCMAKE_PREFIX_PATH='~;~/jasper;~/netcdf' -DCMAKE_INSTALL_PREFIX='~/nceplibs' -DFLAT=ON | |
| make -j2 | |
| - name: checkout-ufs-utils | |
| uses: actions/checkout@v2 | |
| with: | |
| path: ufs_utils | |
| submodules: recursive | |
| - name: cache-data | |
| id: cache-data | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/data | |
| key: data-1 | |
| - name: build | |
| run: | | |
| export ESMFMKFILE=~/esmf/lib/esmf.mk | |
| cd ufs_utils | |
| mkdir build && cd build | |
| export CC=mpicc | |
| export CXX=mpicxx | |
| export FC=mpifort | |
| export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:~/jasper/lib;~/jasper/lib64" | |
| cmake -DTEST_FILE_DIR=/home/runner/work/UFS_UTILS/UFS_UTILS/data -DCMAKE_PREFIX_PATH='~/jasper;~/nceplibs;~/netcdf' .. | |
| make -j2 | |
| - name: test | |
| run: | | |
| cd ufs_utils/build | |
| ctest --rerun-failed --output-on-failure | |
| - name: cache-data | |
| if: steps.cache-data.outputs.cache-hit != 'true' | |
| run: | | |
| mkdir ~/data | |
| cp ufs_utils/build/tests/chgres_cube/data/* ~/data | |
| cp ufs_utils/build/tests/sfc_climo_gen/data/* ~/data | |
| cp ufs_utils/build/tests/cpld_gridgen/data/* ~/data | |
| cp ufs_utils/tests/filter_topo/data/* ~/data | |
| cp ufs_utils/tests/emcsfc_snow2mdl/data/* ~/data | |
| cp ufs_utils/tests/chgres_cube/data/* ~/data | |
| ls -l ~/data | |