Enable testing on Github Actions (#841) #1113
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| name: linux-mac-mpi-nceplibs | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| paths-ignore: | |
| - README.md | |
| pull_request: | |
| branches: | |
| - develop | |
| paths-ignore: | |
| - README.md | |
| defaults: | |
| run: | |
| shell: bash -exo pipefail {0} | |
| jobs: | |
| matrix-build-and-test: | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CC: gcc-9 | |
| FC: gfortran-9 | |
| CXX: g++-9 | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [macos-11, ubuntu-latest] | |
| compiler: [gcc-9] | |
| nceplibs_version: [develop, 1.4.0] | |
| mpi_type: [mpich, openmpi] | |
| netcdf_version: [4.7.4] | |
| steps: | |
| - name: install-dependencies | |
| run: | | |
| echo "$HOME/mpi/bin" >> $GITHUB_PATH | |
| if [[ ${{ matrix.os }} == "ubuntu-latest" ]]; then | |
| sudo apt-get update | |
| sudo apt-get install libpng-dev | |
| sudo apt-get install libjpeg-dev | |
| elif [[ ${{ matrix.os }} == "macos-11" ]]; then | |
| brew update | |
| brew install wget | |
| brew install jpeg-turbo | |
| if [[ ${{ matrix.compiler }} == "gcc-9" ]]; then | |
| sudo ln -sf /usr/local/bin/gfortran-9 /usr/local/bin/gfortran | |
| elif [[ ${{ matrix.compiler }} == "gcc-10" ]]; then | |
| sudo ln -sf /usr/local/bin/gfortran-10 /usr/local/bin/gfortran | |
| fi | |
| fi | |
| - name: cache-mpi | |
| id: cache-mpi | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/mpi | |
| key: mpi-${{ matrix.mpi_type }}-${{ runner.os }} | |
| - name: build-mpi | |
| if: steps.cache-mpi.outputs.cache-hit != 'true' | |
| run: | | |
| if [[ ${{ matrix.mpi_type}} == "mpich" ]]; then | |
| wget http://www.mpich.org/static/downloads/3.3.2/mpich-3.3.2.tar.gz &> /dev/null | |
| tar -xzf mpich-3.3.2.tar.gz | |
| cd mpich-3.3.2 | |
| ./configure --prefix=$HOME/mpi --enable-fortran --enable-cxx | |
| make -j2 | |
| make install | |
| elif [[ ${{ matrix.mpi_type }} == "openmpi" ]]; then | |
| wget https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.1.tar.gz &> /dev/null | |
| tar -xzf openmpi-4.1.1.tar.gz | |
| cd openmpi-4.1.1 | |
| if [[ ${{ matrix.os }} == "ubuntu-latest" ]]; then | |
| ./configure --prefix=$HOME/mpi --enable-mpi-fortran --enable-mpi-cxx | |
| elif [[ ${{ matrix.os }} == "macos-11" ]]; then | |
| ./configure --prefix=$HOME/mpi --enable-mpi-fortran --enable-mpi-cxx --enable-two-level-namespace | |
| fi | |
| make -j2 | |
| make install | |
| fi | |
| - name: cache-netcdf | |
| id: cache-netcdf | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/netcdf | |
| key: netcdf-c-${{ matrix.netcdf_version }}-${{ runner.os }}-${{ matrix.mpi_type }}3 | |
| - name: build-hdf5 | |
| if: steps.cache-netcdf.outputs.cache-hit != 'true' | |
| run: | | |
| export CC=mpicc | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7.tar.gz &> /dev/null | |
| tar -xzf hdf5-1.10.7.tar.gz | |
| pushd hdf5-1.10.7 | |
| ./configure --prefix=${HOME}/netcdf --enable-parallel --disable-tools --disable-fortran --disable-cxx --enable-parallel-tests --disable-shared --enable-static | |
| make -j2 | |
| make install | |
| - name: build-netcdf-c | |
| if: steps.cache-netcdf.outputs.cache-hit != 'true' | |
| run: | | |
| export CC=mpicc | |
| export CPPFLAGS=-I${HOME}/netcdf/include | |
| export LDFLAGS=-L${HOME}/netcdf/lib | |
| wget https://github.com/Unidata/netcdf-c/archive/refs/tags/v${{ matrix.netcdf_version }}.tar.gz &> /dev/null | |
| tar -xzf v${{ matrix.netcdf_version }}.tar.gz | |
| cd netcdf-c-${{ matrix.netcdf_version }} | |
| ./configure --prefix=${HOME}/netcdf --disable-dap --disable-utilities --disable-shared | |
| make -j2 | |
| make install | |
| - name: build-netcdf-fortran | |
| if: steps.cache-netcdf.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| export PATH="${HOME}/netcdf/bin:$PATH" | |
| export CC=mpicc | |
| export FC=mpifort | |
| export CPPFLAGS=-I${HOME}/netcdf/include | |
| export LDFLAGS=-L${HOME}/netcdf/lib | |
| export LIBS=`nc-config --libs` | |
| wget https://github.com/Unidata/netcdf-fortran/archive/v4.5.3.tar.gz &> /dev/null | |
| tar -xzf v4.5.3.tar.gz | |
| pushd netcdf-fortran-4.5.3 | |
| ./configure --prefix=${HOME}/netcdf --disable-shared | |
| make -j2 | |
| make install | |
| - name: cache-esmf | |
| id: cache-esmf | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/esmf | |
| key: esmf--8.2.0-${{ runner.os }}-${{ matrix.mpi_type }}-netcdf-${{ matrix.netcdf_version }}3 | |
| - name: build-esmf | |
| if: steps.cache-esmf.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| pushd ~ | |
| export ESMF_DIR=~/esmf-ESMF_8_2_0 | |
| wget https://github.com/esmf-org/esmf/archive/ESMF_8_2_0.tar.gz &> /dev/null | |
| tar zxf ESMF_8_2_0.tar.gz | |
| cd esmf-ESMF_8_2_0 | |
| if [[ ${{ matrix.mpi_type}} == "mpich" ]]; then | |
| export ESMF_COMM=mpich3 | |
| elif [[ ${{ matrix.mpi_type}} == "openmpi" ]]; then | |
| export ESMF_COMM=openmpi | |
| fi | |
| export ESMF_INSTALL_BINDIR=bin | |
| export ESMF_INSTALL_LIBDIR=lib | |
| export ESMF_INSTALL_MODDIR=mod | |
| export ESMF_COMPILER=gfortran | |
| export ESMF_INSTALL_PREFIX=~/esmf | |
| export ESMF_NETCDF=split | |
| export ESMF_NETCDF_INCLUDE=${HOME}/netcdf/include | |
| export ESMF_NETCDF_LIBPATH=${HOME}/netcdf/lib | |
| export ESMF_NETCDF_LIBS="-lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz" | |
| make -j2 | |
| make install | |
| - name: cache-jasper | |
| id: cache-jasper | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/jasper | |
| key: jasper-2.0.25-${{ runner.os }}3 | |
| - name: build-jasper | |
| if: steps.cache-jasper.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| pwd | |
| wget https://github.com/jasper-software/jasper/archive/version-2.0.25.tar.gz &> /dev/null | |
| tar zxf version-2.0.25.tar.gz | |
| cd jasper-version-2.0.25 | |
| mkdir build-jasper && cd build-jasper | |
| cmake .. -DCMAKE_INSTALL_PREFIX=~/jasper -DJAS_ENABLE_SHARED=OFF | |
| make -j2 | |
| make install | |
| - name: checkout-nceplibs | |
| run: | | |
| git clone https://github.com/NOAA-EMC/NCEPLIBS.git nceplibs | |
| cd nceplibs | |
| if [[ ${{ matrix.nceplibs_version }} == "1.4.0" ]]; then | |
| git checkout v1.4.0 | |
| fi | |
| - name: get-git-hash | |
| run: | | |
| cd nceplibs | |
| git rev-parse HEAD > hash.txt | |
| - name: cache-nceplibs | |
| id: cache-nceplibs | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/nceplibs | |
| key: nceplibs-${{ matrix.nceplibs_version }}-${{ runner.os }}-${{ matrix.mpi_type }}-${{ hashFiles('nceplibs/hash.txt') }}3 | |
| - name: build-nceplibs | |
| if: steps.cache-nceplibs.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| export ESMFMKFILE=~/esmf/lib/esmf.mk | |
| cd nceplibs | |
| mkdir build && cd build | |
| cmake .. -DCMAKE_PREFIX_PATH='~;~/jasper;~/netcdf' -DCMAKE_INSTALL_PREFIX='~/nceplibs' -DFLAT=ON | |
| make -j2 | |
| - name: checkout-ufs-utils | |
| uses: actions/checkout@v2 | |
| with: | |
| path: ufs_utils | |
| submodules: recursive | |
| - name: cache-data | |
| id: cache-data | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/data | |
| key: data-2 | |
| - name: build | |
| run: | | |
| export ESMFMKFILE=~/esmf/lib/esmf.mk | |
| cd ufs_utils | |
| mkdir build && cd build | |
| export CC=mpicc | |
| export CXX=mpicxx | |
| export FC=mpifort | |
| export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:~/jasper/lib;~/jasper/lib64" | |
| export DYLD_LIBRARY_PATH="${LD_LIBRARY_PATH}:~/jasper/lib;~/jasper/lib64" | |
| cmake -DTEST_FILE_DIR=/home/runner/data -DCMAKE_PREFIX_PATH='~/jasper;~/nceplibs;~/netcdf' .. | |
| make -j2 | |
| - name: test | |
| run: | | |
| cd ufs_utils/build | |
| # Oversubscribe for OpenMPI to run more processes than CPUs | |
| export OMPI_MCA_rmaps_base_oversubscribe=1 | |
| ctest --rerun-failed --output-on-failure | |
| - name: cache-data | |
| if: steps.cache-data.outputs.cache-hit != 'true' | |
| run: | | |
| mkdir ~/data | |
| cp ufs_utils/build/tests/chgres_cube/data/* ~/data | |
| cp ufs_utils/build/tests/sfc_climo_gen/data/* ~/data | |
| cp ufs_utils/build/tests/cpld_gridgen/data/* ~/data | |
| cp ufs_utils/tests/filter_topo/data/* ~/data | |
| cp ufs_utils/tests/emcsfc_snow2mdl/data/* ~/data | |
| cp ufs_utils/tests/chgres_cube/data/* ~/data | |
| ls -l ~/data | |