Enable testing on Github Actions (#841) #42
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| # UFS_UTILS test workflow. | |
| # | |
| # Check different versions of the external libraries that are used by UFS_UTILS. | |
| # | |
| # Ed Hartnett 12/16/22 | |
| name: Linux_versions_ext | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| paths-ignore: | |
| - README.md | |
| pull_request: | |
| branches: | |
| - develop | |
| paths-ignore: | |
| - README.md | |
| defaults: | |
| run: | |
| shell: bash -exo pipefail {0} | |
| jobs: | |
| Linux_versions_ext: | |
| runs-on: ubuntu-latest | |
| env: | |
| FC: mpifort | |
| CC: mpicc | |
| FCFLAGS: -fallow-argument-mismatch | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| esmf_version: [8_2_0, 8.3.1, 8.4.0] | |
| bacio_version: [2.4.1] | |
| g2_version: [3.4.3] | |
| sp_version: [2.3.3] | |
| ip_version: [3.3.3] | |
| w3emc_version: [2.9.3] | |
| nemsio_version: [2.5.0] | |
| sfcio_version: [1.4.0] | |
| sigio_version: [2.3.0] | |
| steps: | |
| - name: install-dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libpng-dev zlib1g-dev libjpeg-dev libmpich-dev | |
| sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config | |
| sudo apt-get install autoconf automake libtool | |
| - name: checkout-esmf | |
| id: cache-esmf | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/esmf | |
| key: Linux_versions-esmf-${{ matrix.esmf_version }}-${{ runner.os }} | |
| - name: build-esmf | |
| if: steps.cache-esmf.outputs.cache-hit != 'true' | |
| run: | | |
| pushd ~ | |
| if [[ ${{ matrix.esmf_version }} == "8_2_0" ]]; then | |
| wget https://github.com/esmf-org/esmf/archive/ESMF_${{ matrix.esmf_version }}.tar.gz &> /dev/null | |
| tar zxf ESMF_${{ matrix.esmf_version }}.tar.gz | |
| cd esmf-ESMF_${{ matrix.esmf_version }} | |
| export ESMF_DIR=~/esmf-ESMF_${{ matrix.esmf_version }} | |
| else | |
| wget https://github.com/esmf-org/esmf/archive/refs/tags/v${{ matrix.esmf_version }}.tar.gz &> /dev/null | |
| ls -l | |
| tar zxf v${{ matrix.esmf_version }}.tar.gz | |
| cd esmf-${{ matrix.esmf_version }} | |
| export ESMF_DIR=~/esmf-${{ matrix.esmf_version }} | |
| fi | |
| export ESMF_COMM=mpich3 | |
| export ESMF_INSTALL_BINDIR=bin | |
| export ESMF_INSTALL_LIBDIR=lib | |
| export ESMF_INSTALL_MODDIR=mod | |
| export ESMF_COMPILER=gfortran | |
| export ESMF_INSTALL_PREFIX=~/esmf | |
| export ESMF_NETCDF=split | |
| export ESMF_NETCDF_INCLUDE=/usr/include | |
| export ESMF_NETCDF_LIBPATH=/usr/x86_64-linux-gnu | |
| export ESMF_PIO=OFF | |
| export ESMF_MOAB=OFF | |
| export ESMF_ARRAY_LITE=TRUE | |
| make -j2 | |
| make install | |
| - name: cache-jasper | |
| id: cache-jasper | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/jasper | |
| key: Linux_versions-jasper-${{ runner.os }}-2.0.33-1 | |
| - name: checkout-jasper | |
| if: steps.cache-jasper.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: jasper-software/jasper | |
| path: jasper | |
| ref: version-2.0.33 | |
| - name: build-jasper | |
| if: steps.cache-jasper.outputs.cache-hit != 'true' | |
| run: | | |
| cd jasper | |
| mkdir build-jasper && cd build-jasper | |
| cmake .. -DCMAKE_INSTALL_PREFIX=~/jasper | |
| make -j2 | |
| make install | |
| - name: cache-bacio | |
| id: cache-bacio | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/bacio | |
| key: Linux_versions-bacio-${{ runner.os }}-${{ matrix.bacio_version }} | |
| - name: checkout-bacio | |
| if: steps.cache-bacio.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: NOAA-EMC/NCEPLIBS-bacio | |
| path: bacio | |
| ref: v${{ matrix.bacio_version }} | |
| - name: build-bacio | |
| if: steps.cache-bacio.outputs.cache-hit != 'true' | |
| run: | | |
| cd bacio | |
| mkdir build && cd build | |
| cmake .. -DCMAKE_INSTALL_PREFIX=~/bacio | |
| make -j2 | |
| make install | |
| - name: cache-g2 | |
| id: cache-g2 | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/g2 | |
| key: Linux_versions-g2-${{ runner.os }}-${{ matrix.g2_version }} | |
| - name: checkout-g2 | |
| if: steps.cache-g2.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: NOAA-EMC/NCEPLIBS-g2 | |
| path: g2 | |
| ref: v${{ matrix.g2_version }} | |
| - name: build-g2 | |
| if: steps.cache-g2.outputs.cache-hit != 'true' | |
| run: | | |
| cd g2 | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=~/g2 -DCMAKE_PREFIX_PATH="~/bacio;~/jasper" .. | |
| make -j2 | |
| make install | |
| - name: cache-sp | |
| id: cache-sp | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/sp | |
| key: Linux_versions-sp-${{ runner.os }}-${{ matrix.sp_version }} | |
| - name: checkout-sp | |
| if: steps.cache-sp.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: NOAA-EMC/NCEPLIBS-sp | |
| path: sp | |
| ref: v${{ matrix.sp_version }} | |
| - name: build-sp | |
| if: steps.cache-sp.outputs.cache-hit != 'true' | |
| run: | | |
| cd sp | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_INSTALL_PREFIX=~/sp | |
| make -j2 | |
| make install | |
| - name: cache-ip | |
| id: cache-ip | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/ip | |
| key: Linux_versions-ip-${{ runner.os }}-${{ matrix.ip_version }} | |
| - name: checkout-ip | |
| if: steps.cache-ip.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: NOAA-EMC/NCEPLIBS-ip | |
| path: ip | |
| ref: v${{ matrix.ip_version }} | |
| - name: build-ip | |
| if: steps.cache-ip.outputs.cache-hit != 'true' | |
| run: | | |
| cd ip | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=~/ip -DCMAKE_PREFIX_PATH=~/sp .. | |
| make -j2 | |
| make install | |
| # - name: checkout-g2c | |
| # uses: actions/checkout@v2 | |
| # with: | |
| # repository: NOAA-EMC/NCEPLIBS-g2c | |
| # path: g2c | |
| # ref: develop | |
| # - name: build-g2c | |
| # run: | | |
| # cd g2c | |
| # mkdir build | |
| # cd build | |
| # cmake .. -DCMAKE_INSTALL_PREFIX=~/g2c -DJasper_ROOT=~/jasper | |
| # make -j2 | |
| # make install | |
| - name: cache-sfcio | |
| id: cache-sfcio | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/sfcio | |
| key: Linux_versions-sfcio-${{ runner.os }}-${{ matrix.sfcio_version }} | |
| - name: checkout-sfcio | |
| if: steps.cache-sfcio.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: NOAA-EMC/NCEPLIBS-sfcio | |
| path: sfcio | |
| ref: v${{ matrix.sfcio_version }} | |
| - name: build-sfcio | |
| if: steps.cache-sfcio.outputs.cache-hit != 'true' | |
| run: | | |
| cd sfcio | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_INSTALL_PREFIX=~/sfcio | |
| make -j2 | |
| make install | |
| - name: cache-w3emc | |
| id: cache-w3emc | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/w3emc | |
| key: Linux_versions-w3emc-${{ runner.os }}-${{ matrix.w3emc_version }} | |
| - name: checkout-w3emc | |
| if: steps.cache-w3emc.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: NOAA-EMC/NCEPLIBS-w3emc | |
| path: w3emc | |
| ref: v${{ matrix.w3emc_version }} | |
| - name: build-w3emc | |
| if: steps.cache-w3emc.outputs.cache-hit != 'true' | |
| run: | | |
| cd w3emc | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_INSTALL_PREFIX=~/w3emc -DCMAKE_PREFIX_PATH=~/bacio | |
| make -j2 | |
| make install | |
| - name: cache-nemsio | |
| id: cache-nemsio | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/nemsio | |
| key: Linux_versions-nemsio-${{ runner.os }}-${{ matrix.nemsio_version }} | |
| - name: checkout-nemsio | |
| if: steps.cache-nemsio.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: NOAA-EMC/NCEPLIBS-nemsio | |
| path: nemsio | |
| ref: v${{ matrix.nemsio_version }} | |
| - name: build-nemsio | |
| if: steps.cache-nemsio.outputs.cache-hit != 'true' | |
| run: | | |
| cd nemsio | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=~/nemsio -DCMAKE_PREFIX_PATH="~/bacio;~/w3emc" .. | |
| make -j2 | |
| make install | |
| - name: cache-sigio | |
| id: cache-sigio | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/sigio | |
| key: Linux_versions-sigio-${{ runner.os }}-${{ matrix.sigio_version }} | |
| - name: checkout-sigio | |
| if: steps.cache-sigio.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: NOAA-EMC/NCEPLIBS-sigio | |
| path: sigio | |
| ref: v${{ matrix.sigio_version }} | |
| - name: build-sigio | |
| if: steps.cache-sigio.outputs.cache-hit != 'true' | |
| run: | | |
| cd sigio | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_INSTALL_PREFIX=~/sigio | |
| make -j2 | |
| make install | |
| - name: checkout | |
| uses: actions/checkout@v2 | |
| with: | |
| path: ufs_utils | |
| submodules: true | |
| - name: cache-data | |
| id: cache-data | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/data | |
| key: data-1 | |
| - name: build | |
| run: | | |
| set -x | |
| cd ufs_utils | |
| mkdir build | |
| cd build | |
| export ESMFMKFILE=~/esmf/lib/esmf.mk | |
| cmake -DTEST_FILE_DIR=/home/runner/data -DCMAKE_PREFIX_PATH="~/jasper;~/g2c;~/bacio;~/g2;~/w3emc;~/sfcio;~/sigio;~/nemsio;~/sp;~/ip" .. | |
| make -j2 VERBOSE=1 | |
| - name: test | |
| run: | | |
| cd ufs_utils/build | |
| ctest --verbose --rerun-failed --output-on-failure | |
| - name: cache-data | |
| if: steps.cache-data.outputs.cache-hit != 'true' | |
| run: | | |
| mkdir ~/data | |
| cp ufs_utils/build/tests/chgres_cube/data/* ~/data | |
| cp ufs_utils/build/tests/sfc_climo_gen/data/* ~/data | |
| cp ufs_utils/build/tests/cpld_gridgen/data/* ~/data | |
| cp ufs_utils/tests/filter_topo/data/* ~/data | |
| cp ufs_utils/tests/emcsfc_snow2mdl/data/* ~/data | |
| cp ufs_utils/tests/chgres_cube/data/* ~/data | |
| ls -l ~/data |