Merge pull request #51 from PolyOmica/Updates2024

Minor updates to the README and .gitignore list.

.gitignore

@@ -1,26 +1,47 @@
+/**/*.log
+/**/Makefile
+/**/Makefile.in
+/**/.btmp
 
 # /
 /.project
 /autom4te.cache
 /aclocal.m4
-/Makefile.in
+/config.status
 /configure
+/.Rhistory
 
 # /checks/
-/checks/Makefile
-/checks/Makefile.in
-
-# /checks/R-tests/
-/checks/R-tests/Makefile.in
+/checks/**/*.trs
+/checks/**/*.out.txt
+/checks/probabel_config.cfg
+/checks/*.dose
+/checks/*.prob
+/checks/*.mldose
+/checks/*.map
+/checks/*.info
+/checks/height.PHE
+/checks/probabel
 
 # /doc/
-/doc/Makefile.in
 /doc/doxygen-docs
+/doc/ProbABEL_manual.idx
+/doc/ProbABEL_manual.ilg
+/doc/ProbABEL_manual.ind
+/doc/ProbABEL_manual.log
+/doc/ProbABEL_manual.out
+/doc/ProbABEL_manual.pdf
+/doc/ProbABEL_manual.toc
 
-# /examples/
-/examples/Makefile.in
 
 # /src/
-/src/Makefile.in
+/src/pacoxph
+/src/palinear
+/src/palogist
+/src/stamp-h1
 /src/config.h.in
-.Rhistory
+/src/config.h
+/src/**/*.o
+/src/.deps/
+/src/fvlib/.deps/
+/src/fvlib/.dirstamp

README.org

@@ -1,25 +1,15 @@
 * ProbABEL
-  [[https://api.travis-ci.org/GenABEL-Project/ProbABEL.svg?branch=master]]
-
   ProbABEL is a tool for genome-wide association analysis of imputed
   genetic data. It is part of the GenABEL Suite of tools developed by
-  within [[http://www.genabel.org][the GenABEL Project]].
+  within the GenABEL Project.
 ** IMPORTANT NOTICE
-   Early 2018, PolyOmica, the main sponsor of the GenABEL project announced that it would discontinue its support. 
-   As PolyOmica was our only sponsor, we regretfully have to announce the likely discontinuation of the GenABEL 
-   Project in its current form, unless a new sponsor steps up or someone takes over maintenance and futher 
-   development of (some of) the tools. 
+   Early 2018, PolyOmica, the main sponsor of the GenABEL project announced that it would discontinue its support.
+   As PolyOmica was our only sponsor, we regretfully have to announce the likely discontinuation of the GenABEL
+   Project in its current form, unless a new sponsor steps up or someone takes over maintenance and further
+   development of (some of) the tools.
 ** Installation
    Please see the =INSTALL= file in the =doc= directory for more
    information on how to install ProbABEL.
-** Support
-   For end-user support to ProbABEL please have a look at our forum at
-   http://forum.genabel.org. If you'd like to be kept up-to-date with
-   the latest releases of the tools in the GenABEL suite, please
-   subscribe to the =genabel-announce= mailing list [[https://r-forge.r-project.org/mail/?group_id=505][here]].
-
-   (Potential) Developers are encouraged to sign up for [[https://r-forge.r-project.org/mail/?group_id=505][the
-   =genabel-devel= mailing list on R-forge]].
 ** Licence
    ProbABEL is licensed under the GNU Public Licence v2 or later.