Reject erroneous extra configuration

GazzolaLab · Oct 19, 2023 · bb38a27 · bb38a27
1 parent aeaf558
commit bb38a27
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Showing 6 changed files with 18 additions and 6 deletions.
diff --git a/src/miv_simulator/interface/connections.py b/src/miv_simulator/interface/connections.py
@@ -3,7 +3,7 @@
 import logging
 
 from machinable import Component
-from pydantic import BaseModel, Field
+from pydantic import BaseModel, Field, ConfigDict
 from miv_simulator import config, simulator
 from typing import Optional, Dict
 from miv_simulator.utils import from_yaml
@@ -12,6 +12,8 @@
 
 class Connections(Component):
     class Config(BaseModel):
+        model_config = ConfigDict(extra="forbid")
+
         filepath: str = Field("???")
         forest_filepath: str = Field("???")
         axon_extents: config.AxonExtents = Field("???")

diff --git a/src/miv_simulator/interface/distances.py b/src/miv_simulator/interface/distances.py
@@ -1,7 +1,7 @@
 from typing import Optional, Tuple
 
 import logging
-from pydantic import BaseModel
+from pydantic import BaseModel, ConfigDict
 
 from machinable import Component
 from machinable.config import Field
@@ -11,6 +11,8 @@
 
 class MeasureDistances(Component):
     class Config(BaseModel):
+        model_config = ConfigDict(extra="forbid")
+
         filepath: str = Field("???")
         cell_distributions: config.CellDistributions = Field("???")
         layer_extents: config.LayerExtents = Field("???")

diff --git a/src/miv_simulator/interface/h5_types.py b/src/miv_simulator/interface/h5_types.py
@@ -1,5 +1,5 @@
 from machinable import Component
-from pydantic import BaseModel, Field
+from pydantic import BaseModel, Field, ConfigDict
 from miv_simulator import config
 from mpi4py import MPI
 from miv_simulator.utils import io as io_utils, from_yaml
@@ -8,6 +8,8 @@
 
 class H5Types(Component):
     class Config(BaseModel):
+        model_config = ConfigDict(extra="forbid")
+
         cell_distributions: config.CellDistributions = Field("???")
         synapses: config.Synapses = Field("???")
 

diff --git a/src/miv_simulator/interface/network_architecture.py b/src/miv_simulator/interface/network_architecture.py
@@ -8,13 +8,15 @@
 from miv_simulator import config, simulator
 from miv_simulator.utils import io as io_utils, from_yaml
 from mpi4py import MPI
-from pydantic import BaseModel, Field
+from pydantic import BaseModel, Field, ConfigDict
 
 
 class NetworkArchitecture(Component):
     """Creates the network architecture by generating the soma coordinates within specified layer geometry."""
 
     class Config(BaseModel):
+        model_config = ConfigDict(extra="forbid")
+
         filepath: str = Field("???")
         cell_distributions: config.CellDistributions = Field("???")
         synapses: config.Synapses = Field("???")

diff --git a/src/miv_simulator/interface/synapse_forest.py b/src/miv_simulator/interface/synapse_forest.py
@@ -1,10 +1,12 @@
 from machinable import Component
 from miv_simulator import config, simulator
-from pydantic import BaseModel, Field
+from pydantic import BaseModel, Field, ConfigDict
 
 
 class GenerateSynapseForest(Component):
     class Config(BaseModel):
+        model_config = ConfigDict(extra="forbid")
+
         filepath: str = Field("???")
         population: config.PopulationName = Field("???")
         morphology: config.SWCFilePath = Field("???")

diff --git a/src/miv_simulator/interface/synapses.py b/src/miv_simulator/interface/synapses.py
@@ -3,14 +3,16 @@
 from machinable import Component
 from miv_simulator import config
 from miv_simulator import simulator
-from pydantic import BaseModel, Field
+from pydantic import BaseModel, Field, ConfigDict
 from typing import Optional, Dict
 from miv_simulator.utils import from_yaml
 from mpi4py import MPI
 
 
 class Synapses(Component):
     class Config(BaseModel):
+        model_config = ConfigDict(extra="forbid")
+
         forest_filepath: str = Field("???")
         cell_types: config.CellTypes = Field("???")
         population: str = Field("???")