Remove treefam app from repo

app/package.json

@@ -14,7 +14,7 @@
     "@emotion/react": "^11.10.8",
     "@emotion/styled": "^11.10.8",
     "@jbrowse/core": "^2.13.1",
-    "@mui/material": "^5.0.0",
+    "@mui/material": "^6.0.2",
     "@mui/x-data-grid": "^7.12.0",
     "buffer": "^6.0.3",
     "gh-pages": "^6.0.0",

lib/package.json

@@ -38,8 +38,8 @@
   },
   "dependencies": {
     "@eslint/js": "^9.8.0",
-    "@mui/icons-material": "^5.0.0",
-    "@mui/material": "^5.0.0",
+    "@mui/icons-material": "^6.0.2",
+    "@mui/material": "^6.0.2",
     "@types/node": "^22.1.0",
     "clustal-js": "^2.0.0",
     "colord": "^2.9.3",

lib/src/components/tree/TreeNodeMenu.tsx

@@ -13,11 +13,17 @@ const TreeMenu = observer(function ({
   onClose,
   model,
 }: {
-  node: { x: number; y: number; name: string; id: string }
+  node: {
+    x: number
+    y: number
+    name: string
+    id: string
+  }
   model: MsaViewModel
   onClose: () => void
 }) {
   const { collapsed, collapsedLeaves } = model
+  const { name } = node
   return (
     <Menu
       anchorReference="anchorPosition"
@@ -31,7 +37,7 @@ const TreeMenu = observer(function ({
       onClose={onClose}
     >
       <MenuItem dense disabled>
-        {node.name}
+        {name}
       </MenuItem>
 
       <MenuItem
@@ -40,9 +46,9 @@ const TreeMenu = observer(function ({
           model.queueDialog(onClose => [
             TreeNodeInfoDialog,
             {
-              info: model.getRowData(node.name),
+              info: model.getRowData(name),
               model,
-              nodeName: node.name,
+              nodeName: name,
               onClose,
             },
           ])

lib/src/index.ts

@@ -1,2 +1,3 @@
 export { default as MSAView } from './components/Loading'
 export { default as MSAModelF, type MsaViewModel } from './model'
+console.log('wtf')

package.json

@@ -3,9 +3,7 @@
   "license": "MIT",
   "workspaces": [
     "lib",
-    "app",
-    "app2",
-    "treefam_app"
+    "app"
   ],
   "scripts": {
     "lint": "eslint --report-unused-disable-directives --max-warnings 0",
@@ -18,8 +16,8 @@
     "@eslint/eslintrc": "^3.1.0",
     "@eslint/js": "^9.8.0",
     "@jbrowse/core": "^2.13.1",
-    "@mui/icons-material": "^5.0.0",
-    "@mui/material": "^5.0.0",
+    "@mui/icons-material": "^6.0.2",
+    "@mui/material": "^6.0.2",
     "@rollup/plugin-commonjs": "^26.0.1",
     "@rollup/plugin-json": "^6.0.0",
     "@rollup/plugin-node-resolve": "^15.0.2",