MouseCol2

GMOD · Oct 30, 2023 · 618d003 · 618d003
1 parent 1ef1ed6
commit 618d003
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Showing 4 changed files with 155 additions and 28 deletions.
diff --git a/.eslintignore b/.eslintignore
@@ -6,3 +6,4 @@ node_modules/
 **/dist/
 **/bundle/
 .eslintrc.js
+lib/output-version.js
diff --git a/app/package.json b/app/package.json
@@ -13,19 +13,19 @@
   "dependencies": {
     "@emotion/react": "^11.10.8",
     "@emotion/styled": "^11.10.8",
-    "@jbrowse/core": "^2.4.2",
-    "@mui/material": "^5.12.3",
-    "@mui/x-data-grid": "^6.14.0",
+    "@jbrowse/core": "^2.7.2",
+    "@mui/material": "^5.14.15",
+    "@mui/x-data-grid": "^6.17.0",
     "@testing-library/jest-dom": "^6.1.3",
     "@testing-library/react": "^14.0.0",
     "@testing-library/user-event": "^14.5.1",
     "@types/jest": "^29.5.1",
-    "@types/node": "^20.6.2",
+    "@types/node": "^20.8.9",
     "buffer": "^6.0.3",
     "gh-pages": "^6.0.0",
     "mobx": "^6.9.0",
     "mobx-react": "^9.0.1",
-    "mobx-state-tree": "5.2.0",
+    "mobx-state-tree": "5.3.0",
     "ngl": "^2.0.0",
     "react": "^18.2.0",
     "react-dom": "^18.2.0",
@@ -35,7 +35,7 @@
     "tss-react": "^4.8.3"
   },
   "devDependencies": {
-    "@types/react": "^18.2.0",
+    "@types/react": "^18.2.33",
     "@types/react-dom": "^18.2.1",
     "@vitejs/plugin-react": "^4.0.0",
     "typescript": "^5.0.4",

diff --git a/lib/package.json b/lib/package.json
@@ -38,13 +38,14 @@
     "@rollup/plugin-commonjs": "^25.0.4",
     "@rollup/plugin-json": "^6.0.0",
     "@rollup/plugin-node-resolve": "^15.0.2",
-    "@rollup/plugin-replace": "^5.0.2",
+    "@rollup/plugin-replace": "^5.0.5",
     "@rollup/plugin-terser": "^0.4.1",
     "@rollup/plugin-typescript": "^11.1.0",
     "@types/color": "^3.0.1",
     "@types/d3": "^7.4.0",
-    "@types/react": "^18.2.0",
+    "@types/react": "^18.2.33",
     "@types/react-dom": "^18.2.1",
+    "eslint-plugin-unicorn": "^49.0.0",
     "rollup": "^3.0.2",
     "rollup-plugin-polyfill-node": "^0.12.0",
     "slugify": "^1.6.6",

diff --git a/yarn.lock b/yarn.lock
@@ -530,10 +530,10 @@
   resolved "https://registry.yarnpkg.com/@humanwhocodes/object-schema/-/object-schema-2.0.1.tgz#e5211452df060fa8522b55c7b3c0c4d1981cb044"
   integrity sha512-dvuCeX5fC9dXgJn9t+X5atfmgQAzUOWqS1254Gh0m6i8wKd10ebXkfNKiRK+1GWi/yTvvLDHpoxLr0xxxeslWw==
 
-"@jbrowse/core@^2.4.2":
-  version "2.7.1"
-  resolved "https://registry.yarnpkg.com/@jbrowse/core/-/core-2.7.1.tgz#0389f455b2cbb65af2094c498935bc9b971f9200"
-  integrity sha512-9l4byuy4pe59eM4T8M/hxqyCcc5nn4jMKF0HUd+fnOIeg0cfw/JplcswufGyEvqPzj7HhFBFsVHwVj3DZ79/LA==
+"@jbrowse/core@^2.7.2":
+  version "2.7.2"
+  resolved "https://registry.yarnpkg.com/@jbrowse/core/-/core-2.7.2.tgz#1129f21aca493f0f7af40b381363514b23ef2f73"
+  integrity sha512-nzT1lFgdoABDs6N/T+BWWZwQfDPdsITj2rzk4U2Hum6gdO8zoXsKBc6uaZG9mK/zkpP8EkjYftpeIcAi3mEjPA==
   dependencies:
     "@babel/runtime" "^7.17.9"
     "@gmod/bgzf-filehandle" "^1.4.3"
@@ -648,19 +648,37 @@
     clsx "^2.0.0"
     prop-types "^15.8.1"
 
+"@mui/[email protected]":
+  version "5.0.0-beta.21"
+  resolved "https://registry.yarnpkg.com/@mui/base/-/base-5.0.0-beta.21.tgz#5bf952c9d3703ae4f697702f0821e5dea178f34e"
+  integrity sha512-eTKWx3WV/nwmRUK4z4K1MzlMyWCsi3WJ3RtV4DiXZeRh4qd4JCyp1Zzzi8Wv9xM4dEBmqQntFoei716PzwmFfA==
+  dependencies:
+    "@babel/runtime" "^7.23.2"
+    "@floating-ui/react-dom" "^2.0.2"
+    "@mui/types" "^7.2.7"
+    "@mui/utils" "^5.14.15"
+    "@popperjs/core" "^2.11.8"
+    clsx "^2.0.0"
+    prop-types "^15.8.1"
+
 "@mui/core-downloads-tracker@^5.14.14":
   version "5.14.14"
   resolved "https://registry.yarnpkg.com/@mui/core-downloads-tracker/-/core-downloads-tracker-5.14.14.tgz#a54894e9b4dc908ab2d59eac543219d9018448e6"
   integrity sha512-Rw/xKiTOUgXD8hdKqj60aC6QcGprMipG7ne2giK6Mz7b4PlhL/xog9xLeclY3BxsRLkZQ05egFnIEY1CSibTbw==
 
+"@mui/core-downloads-tracker@^5.14.15":
+  version "5.14.15"
+  resolved "https://registry.yarnpkg.com/@mui/core-downloads-tracker/-/core-downloads-tracker-5.14.15.tgz#23a9100eb125e5ab92e350e53e613e171d80be3b"
+  integrity sha512-ZCDzBWtCKjAYAlKKM3PA/jG/3uVIDT9ZitOtVixIVmTCQyc5jSV1qhJX8+qIGz4RQZ9KLzPWO2tXd0O5hvzouQ==
+
 "@mui/icons-material@^5.0.1":
   version "5.14.14"
   resolved "https://registry.yarnpkg.com/@mui/icons-material/-/icons-material-5.14.14.tgz#02d33f51f0b9de238d5c47b0a31ff330144393c4"
   integrity sha512-vwuaMsKvI7AWTeYqR8wYbpXijuU8PzMAJWRAq2DDIuOZPxjKyHlr8WQ25+azZYkIXtJ7AqnVb1ZmHdEyB4/kug==
   dependencies:
     "@babel/runtime" "^7.23.1"
 
-"@mui/material@^5.0.0", "@mui/material@^5.12.3":
+"@mui/material@^5.0.0":
   version "5.14.14"
   resolved "https://registry.yarnpkg.com/@mui/material/-/material-5.14.14.tgz#e47f3992b609002cd57a71f70e829dc2d286028c"
   integrity sha512-cAmCwAHFQXxb44kWbVFkhKATN8tACgMsFwrXo8ro6WzYW73U/qsR5AcCiJIhCyYYg+gcftfkmNcpRaV3JjhHCg==
@@ -678,6 +696,24 @@
     react-is "^18.2.0"
     react-transition-group "^4.4.5"
 
+"@mui/material@^5.14.15":
+  version "5.14.15"
+  resolved "https://registry.yarnpkg.com/@mui/material/-/material-5.14.15.tgz#dadc58588aef4556a0ed6a2d70ad70922df5264f"
+  integrity sha512-Gq65rHjvLzkxmhG8bvag851Oqsmru7qkUb/cCI2xu7dQzmY345f9xJRJi72sRGjhaqHXWeRKw/yIwp/7oQoeXg==
+  dependencies:
+    "@babel/runtime" "^7.23.2"
+    "@mui/base" "5.0.0-beta.21"
+    "@mui/core-downloads-tracker" "^5.14.15"
+    "@mui/system" "^5.14.15"
+    "@mui/types" "^7.2.7"
+    "@mui/utils" "^5.14.15"
+    "@types/react-transition-group" "^4.4.7"
+    clsx "^2.0.0"
+    csstype "^3.1.2"
+    prop-types "^15.8.1"
+    react-is "^18.2.0"
+    react-transition-group "^4.4.5"
+
 "@mui/private-theming@^5.14.14":
   version "5.14.14"
   resolved "https://registry.yarnpkg.com/@mui/private-theming/-/private-theming-5.14.14.tgz#035dde1eb30c896c69a12b7dee1dce3a323c66e9"
@@ -687,6 +723,15 @@
     "@mui/utils" "^5.14.13"
     prop-types "^15.8.1"
 
+"@mui/private-theming@^5.14.15":
+  version "5.14.15"
+  resolved "https://registry.yarnpkg.com/@mui/private-theming/-/private-theming-5.14.15.tgz#1889c92cf8b5c3bca1cdfcc678010c24ad57102d"
+  integrity sha512-V2Xh+Tu6A07NoSpup0P9m29GwvNMYl5DegsGWqlOTJyAV7cuuVjmVPqxgvL8xBng4R85xqIQJRMjtYYktoPNuQ==
+  dependencies:
+    "@babel/runtime" "^7.23.2"
+    "@mui/utils" "^5.14.15"
+    prop-types "^15.8.1"
+
 "@mui/styled-engine@^5.14.13":
   version "5.14.14"
   resolved "https://registry.yarnpkg.com/@mui/styled-engine/-/styled-engine-5.14.14.tgz#b0ededf531fff1ef110f7b263c2d3d95a0b8ec9a"
@@ -697,6 +742,16 @@
     csstype "^3.1.2"
     prop-types "^15.8.1"
 
+"@mui/styled-engine@^5.14.15":
+  version "5.14.15"
+  resolved "https://registry.yarnpkg.com/@mui/styled-engine/-/styled-engine-5.14.15.tgz#01e9bd5cc0f4d83e9f636086d42b92ed1b0a360e"
+  integrity sha512-mbOjRf867BysNpexe5Z/P8s3bWzDPNowmKhi7gtNDP/LPEeqAfiDSuC4WPTXmtvse1dCl30Nl755OLUYuoi7Mw==
+  dependencies:
+    "@babel/runtime" "^7.23.2"
+    "@emotion/cache" "^11.11.0"
+    csstype "^3.1.2"
+    prop-types "^15.8.1"
+
 "@mui/system@^5.14.14":
   version "5.14.14"
   resolved "https://registry.yarnpkg.com/@mui/system/-/system-5.14.14.tgz#f33327e74230523169107ace960e8bb51cbdbab7"
@@ -711,11 +766,30 @@
     csstype "^3.1.2"
     prop-types "^15.8.1"
 
+"@mui/system@^5.14.15":
+  version "5.14.15"
+  resolved "https://registry.yarnpkg.com/@mui/system/-/system-5.14.15.tgz#d232134170c46a09414c1ec8707d42bdc043fd90"
+  integrity sha512-zr0Gdk1RgKiEk+tCMB900LaOpEC8NaGvxtkmMdL/CXgkqQZSVZOt2PQsxJWaw7kE4YVkIe4VukFVc43qcq9u3w==
+  dependencies:
+    "@babel/runtime" "^7.23.2"
+    "@mui/private-theming" "^5.14.15"
+    "@mui/styled-engine" "^5.14.15"
+    "@mui/types" "^7.2.7"
+    "@mui/utils" "^5.14.15"
+    clsx "^2.0.0"
+    csstype "^3.1.2"
+    prop-types "^15.8.1"
+
 "@mui/types@^7.2.6":
   version "7.2.6"
   resolved "https://registry.yarnpkg.com/@mui/types/-/types-7.2.6.tgz#d72b9e9eb0032e107e76033932d65c3f731d2608"
   integrity sha512-7sjLQrUmBwufm/M7jw/quNiPK/oor2+pGUQP2CULRcFCArYTq78oJ3D5esTaL0UMkXKJvDqXn6Ike69yAOBQng==
 
+"@mui/types@^7.2.7":
+  version "7.2.7"
+  resolved "https://registry.yarnpkg.com/@mui/types/-/types-7.2.7.tgz#726052f7d519f0f64657576109aa297def9443ac"
+  integrity sha512-sofpWmcBqOlTzRbr1cLQuUDKaUYVZTw8ENQrtL39TECRNENEzwgnNPh6WMfqMZlMvf1Aj9DLg74XPjnLr0izUQ==
+
 "@mui/utils@^5.14.13", "@mui/utils@^5.14.14":
   version "5.14.14"
   resolved "https://registry.yarnpkg.com/@mui/utils/-/utils-5.14.14.tgz#7b2a0bcfb44c3376fc81f85500f9bd01706682ac"
@@ -726,10 +800,20 @@
     prop-types "^15.8.1"
     react-is "^18.2.0"
 
-"@mui/x-data-grid@^6.14.0":
-  version "6.16.3"
-  resolved "https://registry.yarnpkg.com/@mui/x-data-grid/-/x-data-grid-6.16.3.tgz#5440b7f56ee2e62a315b36c2a1f900b11da8fa59"
-  integrity sha512-msohYxn11JHzeQOywaH5wGSCb/fESootqHLKG6LuET7xOxjHS8GlN/GuW/4kKcbQRunSVh/ADwqpqq+SmWrSeQ==
+"@mui/utils@^5.14.15":
+  version "5.14.15"
+  resolved "https://registry.yarnpkg.com/@mui/utils/-/utils-5.14.15.tgz#5f8bc39f29cf9fe95fa2c725e441f2116656d9fd"
+  integrity sha512-QBfHovAvTa0J1jXuYDaXGk+Yyp7+Fm8GSqx6nK2JbezGqzCFfirNdop/+bL9Flh/OQ/64PeXcW4HGDdOge+n3A==
+  dependencies:
+    "@babel/runtime" "^7.23.2"
+    "@types/prop-types" "^15.7.8"
+    prop-types "^15.8.1"
+    react-is "^18.2.0"
+
+"@mui/x-data-grid@^6.17.0":
+  version "6.17.0"
+  resolved "https://registry.yarnpkg.com/@mui/x-data-grid/-/x-data-grid-6.17.0.tgz#ef8b04ddc53a9a3cf25dbd55efcc09f7d63cb01b"
+  integrity sha512-HlpavV9jR7bLDYfi7n05R0xSsLl5ZxCTy3J5g4OfQtxhg9Zsu1uOkkLfudsM5LFqTbi5o+3PvZ9Kh33VvNUN/w==
   dependencies:
     "@babel/runtime" "^7.23.2"
     "@mui/utils" "^5.14.14"
@@ -820,10 +904,10 @@
     is-module "^1.0.0"
     resolve "^1.22.1"
 
-"@rollup/plugin-replace@^5.0.2":
-  version "5.0.4"
-  resolved "https://registry.yarnpkg.com/@rollup/plugin-replace/-/plugin-replace-5.0.4.tgz#fef548dc751d06747e8dca5b0e8e1fbf647ac7e1"
-  integrity sha512-E2hmRnlh09K8HGT0rOnnri9OTh+BILGr7NVJGB30S4E3cLRn3J0xjdiyOZ74adPs4NiAMgrjUMGAZNJDBgsdmQ==
+"@rollup/plugin-replace@^5.0.5":
+  version "5.0.5"
+  resolved "https://registry.yarnpkg.com/@rollup/plugin-replace/-/plugin-replace-5.0.5.tgz#33d5653dce6d03cb24ef98bef7f6d25b57faefdf"
+  integrity sha512-rYO4fOi8lMaTg/z5Jb+hKnrHHVn8j2lwkqwyS4kTRhKyWOLf2wST2sWXr4WzWiTcoHTp2sTjqUbqIj2E39slKQ==
   dependencies:
     "@rollup/pluginutils" "^5.0.1"
     magic-string "^0.30.3"
@@ -1280,13 +1364,20 @@
   resolved "https://registry.yarnpkg.com/@types/json5/-/json5-0.0.29.tgz#ee28707ae94e11d2b827bcbe5270bcea7f3e71ee"
   integrity sha512-dRLjCWHYg4oaA77cxO64oO+7JwCwnIzkZPdrrC71jQmQtlhM556pwKo5bUzqvZndkVbeFLIIi+9TC40JNF5hNQ==
 
-"@types/node@*", "@types/node@^20.6.2":
+"@types/node@*":
   version "20.8.8"
   resolved "https://registry.yarnpkg.com/@types/node/-/node-20.8.8.tgz#adee050b422061ad5255fc38ff71b2bb96ea2a0e"
   integrity sha512-YRsdVxq6OaLfmR9Hy816IMp33xOBjfyOgUd77ehqg96CFywxAPbDbXvAsuN2KVg2HOT8Eh6uAfU+l4WffwPVrQ==
   dependencies:
     undici-types "~5.25.1"
 
+"@types/node@^20.8.9":
+  version "20.8.9"
+  resolved "https://registry.yarnpkg.com/@types/node/-/node-20.8.9.tgz#646390b4fab269abce59c308fc286dcd818a2b08"
+  integrity sha512-UzykFsT3FhHb1h7yD4CA4YhBHq545JC0YnEz41xkipN88eKQtL6rSgocL5tbAP6Ola9Izm/Aw4Ora8He4x0BHg==
+  dependencies:
+    undici-types "~5.26.4"
+
 "@types/normalize-package-data@^2.4.0":
   version "2.4.3"
   resolved "https://registry.yarnpkg.com/@types/normalize-package-data/-/normalize-package-data-2.4.3.tgz#291c243e4b94dbfbc0c0ee26b7666f1d5c030e2c"
@@ -1302,7 +1393,7 @@
   resolved "https://registry.yarnpkg.com/@types/parse-json/-/parse-json-4.0.1.tgz#27f7559836ad796cea31acb63163b203756a5b4e"
   integrity sha512-3YmXzzPAdOTVljVMkTMBdBEvlOLg2cDQaDhnnhT3nT9uDbnJzjWhKlzb+desT12Y7tGqaN6d+AbozcKzyL36Ng==
 
-"@types/prop-types@*", "@types/prop-types@^15.7.7":
+"@types/prop-types@*", "@types/prop-types@^15.7.7", "@types/prop-types@^15.7.8":
   version "15.7.9"
   resolved "https://registry.yarnpkg.com/@types/prop-types/-/prop-types-15.7.9.tgz#b6f785caa7ea1fe4414d9df42ee0ab67f23d8a6d"
   integrity sha512-n1yyPsugYNSmHgxDFjicaI2+gCNjsBck8UX9kuofAKlc0h1bL+20oSF72KeNaW2DUlesbEVCFgyV2dPGTiY42g==
@@ -1326,7 +1417,7 @@
   dependencies:
     "@types/react" "*"
 
-"@types/react@*", "@types/react@^18.2.0":
+"@types/react@*":
   version "18.2.31"
   resolved "https://registry.yarnpkg.com/@types/react/-/react-18.2.31.tgz#74ae2630e4aa9af599584157abd3b95d96fb9b40"
   integrity sha512-c2UnPv548q+5DFh03y8lEDeMfDwBn9G3dRwfkrxQMo/dOtRHUUO57k6pHvBIfH/VF4Nh+98mZ5aaSe+2echD5g==
@@ -1335,6 +1426,15 @@
     "@types/scheduler" "*"
     csstype "^3.0.2"
 
+"@types/react@^18.2.33":
+  version "18.2.33"
+  resolved "https://registry.yarnpkg.com/@types/react/-/react-18.2.33.tgz#055356243dc4350a9ee6c6a2c07c5cae12e38877"
+  integrity sha512-v+I7S+hu3PIBoVkKGpSYYpiBT1ijqEzWpzQD62/jm4K74hPpSP7FF9BnKG6+fg2+62weJYkkBWDJlZt5JO/9hg==
+  dependencies:
+    "@types/prop-types" "*"
+    "@types/scheduler" "*"
+    csstype "^3.0.2"
+
 "@types/[email protected]":
   version "1.20.2"
   resolved "https://registry.yarnpkg.com/@types/resolve/-/resolve-1.20.2.tgz#97d26e00cd4a0423b4af620abecf3e6f442b7975"
@@ -2366,6 +2466,26 @@ eslint-plugin-unicorn@^48.0.1:
     semver "^7.5.4"
     strip-indent "^3.0.0"
 
+eslint-plugin-unicorn@^49.0.0:
+  version "49.0.0"
+  resolved "https://registry.yarnpkg.com/eslint-plugin-unicorn/-/eslint-plugin-unicorn-49.0.0.tgz#4449ea954d7e1455eec8518f9417d7021b245fa8"
+  integrity sha512-0fHEa/8Pih5cmzFW5L7xMEfUTvI9WKeQtjmKpTUmY+BiFCDxkxrTdnURJOHKykhtwIeyYsxnecbGvDCml++z4Q==
+  dependencies:
+    "@babel/helper-validator-identifier" "^7.22.20"
+    "@eslint-community/eslint-utils" "^4.4.0"
+    ci-info "^3.8.0"
+    clean-regexp "^1.0.0"
+    esquery "^1.5.0"
+    indent-string "^4.0.0"
+    is-builtin-module "^3.2.1"
+    jsesc "^3.0.2"
+    pluralize "^8.0.0"
+    read-pkg-up "^7.0.1"
+    regexp-tree "^0.1.27"
+    regjsparser "^0.10.0"
+    semver "^7.5.4"
+    strip-indent "^3.0.0"
+
 eslint-scope@^7.2.2:
   version "7.2.2"
   resolved "https://registry.yarnpkg.com/eslint-scope/-/eslint-scope-7.2.2.tgz#deb4f92563390f32006894af62a22dba1c46423f"
@@ -3516,10 +3636,10 @@ mobx-react@^9.0.1:
   dependencies:
     mobx-react-lite "^4.0.4"
 
-mobx-state-tree@5.2.0:
-  version "5.2.0"
-  resolved "https://registry.yarnpkg.com/mobx-state-tree/-/mobx-state-tree-5.2.0.tgz#784fb22b7d2b1598c6b4fb8987d68d86eaf66d8b"
-  integrity sha512-TAKfMHEF9F59iAcLbD1Y9D8Kand4NoYM1h8Yv3Ol5la9X0I7T4Y/mhVN/oK/bi3g0v7dYy9wsoni2T66zCohGQ==
+mobx-state-tree@5.3.0:
+  version "5.3.0"
+  resolved "https://registry.yarnpkg.com/mobx-state-tree/-/mobx-state-tree-5.3.0.tgz#fb743c4bfe770628aaed2f4d961a4b61fdd74126"
+  integrity sha512-2XInCjIxGQx/UmTbpAreWKcHswmuOKOV23HJmy1x4gqyDqCcOHJcaClpWnD2/qQlGncg8gAUfP/mm+cLpTrtlQ==
 
 mobx@^6.9.0:
   version "6.10.2"
@@ -4631,6 +4751,11 @@ undici-types@~5.25.1:
   resolved "https://registry.yarnpkg.com/undici-types/-/undici-types-5.25.3.tgz#e044115914c85f0bcbb229f346ab739f064998c3"
   integrity sha512-Ga1jfYwRn7+cP9v8auvEXN1rX3sWqlayd4HP7OKk4mZWylEmu3KzXDUGrQUN6Ol7qo1gPvB2e5gX6udnyEPgdA==
 
+undici-types@~5.26.4:
+  version "5.26.5"
+  resolved "https://registry.yarnpkg.com/undici-types/-/undici-types-5.26.5.tgz#bcd539893d00b56e964fd2657a4866b221a65617"
+  integrity sha512-JlCMO+ehdEIKqlFxk6IfVoAUVmgz7cU7zD/h9XZ0qzeosSHmUJVOzSQvvYSYWXkFXC+IfLKSIffhv0sVZup6pA==
+
 universalify@^2.0.0:
   version "2.0.0"
   resolved "https://registry.yarnpkg.com/universalify/-/universalify-2.0.0.tgz#75a4984efedc4b08975c5aeb73f530d02df25717"