Skip to content

2.3.1

Compare
Choose a tag to compare
@nathandunn nathandunn released this 19 Feb 15:40
· 675 commits to master since this release

2.3.1 Official Release

Many bug fixes and some minor enhancements. Many thanks to the community for reporting, testing, and fixing these issues.

https://github.com/GMOD/Apollo/blob/master/ChangeLog.md#231

To test in Docker:

docker run -it -p 8888:8080 quay.io/gmod/docker-apollo:2.3.0 -v /path/to/jbrowse/directories:/data/
Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/

Note: You can find a guide upgrading existing Apollo installations here:
https://genomearchitect.readthedocs.io/en/latest/Migration.html

Please open a GitHub issue if you find any problems: https://github.com/GMOD/Apollo/issues/

Active mailing list ([email protected]) and archive.

Bug Fixes

  • Fixed issue when dragging features to resize was not providing an indicator box 1988
  • Fixed issue when sequence alterations were not rendering the full height of the sequence track 2049
  • Making organisms obsolete should remove associated permissions 2043
  • User-created features taken from split reads should create features with introns 2036
  • Should indicate split reads properly in evidence 20342054
  • Temporary files not removed during export of GFF3 or other file types 1966
  • Fixed issue where you could not alter an isoform after deleting a gene name 1961
  • Fixed some minor issues associated with sequence alterations 1497
  • Multiple owners tagged on GFF3 export 29
  • Setting gene description puts UcA into a bad state 2056
  • Fixes plugin inclusion error by reverting prior fix 2055

Minor Features

  • Allowed duplication of organism from the Organism Panel 1968
  • Allows making an organism obsolete 1967
  • Create a filter and flag for inactive users 1937
  • Allowed deletion of feature from the Sequence and Annotator Panels 2040
  • Allow export of orig_id as an optional attribute 2002