Fixed eating paranthetical statements (#211)

Future-House · Nov 21, 2023 · 6092eab · 6092eab
1 parent 30e9989
commit 6092eab
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Showing 2 changed files with 7 additions and 2 deletions.
diff --git a/paperqa/types.py b/paperqa/types.py
@@ -145,6 +145,7 @@ def markdown(self) -> Tuple[str, str]:
         index = 1
         for citation in iter_citations(self.answer):
             compound = ""
+            strip = True
             for c in citation.split(",;"):
                 c = c.strip("() ")
                 if c == "Extra background information":
@@ -157,17 +158,21 @@ def markdown(self) -> Tuple[str, str]:
                     self.get_citation(c)
                 except ValueError:
                     # not a citation
+                    strip = False
                     continue
                 refs[c] = index
                 compound += f"[^{index}]"
                 index += 1
-            output = output.replace(citation, compound)
+            if strip:
+                output = output.replace(citation, compound)
         formatted_refs = "\n".join(
             [
                 f"[^{i}]: [{self.get_citation(r)}]({extract_doi(self.get_citation(r))})"
                 for r, i in refs.items()
             ]
         )
+        # quick fix of space before period
+        output = output.replace(" .", ".")
         return output, formatted_refs
 
     def combine_with(self, other: "Answer") -> "Answer":

diff --git a/paperqa/version.py b/paperqa/version.py
@@ -1 +1 @@
-__version__ = "3.13.1"
+__version__ = "3.13.2"