Changes to avoid including missing values in computations. #313
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| name: Intel Linux Build | |
| on: [push, pull_request, workflow_dispatch] | |
| # Use custom shell with -l so .bash_profile is sourced which loads intel/oneapi/setvars.sh | |
| # without having to do it in manually every step | |
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| # Set I_MPI_CC/F90 so Intel MPI wrapper uses icc/ifort instead of gcc/gfortran | |
| env: | |
| cache_key: intel3 # The number (#) following the cache_key "intel" is to flush Action cache. | |
| CC: icc | |
| FC: ifort | |
| CXX: icpc | |
| I_MPI_CC: icc | |
| I_MPI_F90: ifort | |
| # A note on flushing Action cache and relevance to "cache_key" above. | |
| # There is no way to flush the Action cache, and hence a number (#) is appended | |
| # to the "cache_key" (intel). | |
| # If the dependencies change, increment this number and a new cache will be | |
| # generated by the dependency build step "setup" | |
| # There is a Github issue to force clear the cache. | |
| # See discussion on: | |
| # https://stackoverflow.com/questions/63521430/clear-cache-in-github-actions | |
| # The jobs are split into: | |
| # 1. a dependency build step (setup), and | |
| # 2. a UPP build step (build) | |
| # The setup is run once and the environment is cached, | |
| # so each build of UPP can reuse the cached dependencies to save time (and compute). | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: checkout-upp # This is for getting spack.yaml | |
| if: steps.cache-env.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v2 | |
| with: | |
| path: UPP | |
| # Cache spack, compiler and dependencies | |
| - name: cache-env | |
| id: cache-env | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| spack | |
| ~/.spack | |
| /opt/intel | |
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('UPP/ci/spack.yaml') }} | |
| - name: install-intel-compilers | |
| run: | | |
| wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | |
| sudo apt-get update | |
| sudo apt-get install intel-oneapi-dev-utilities intel-oneapi-mpi-devel intel-oneapi-openmp intel-oneapi-compiler-fortran-2023.2.1 intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-2023.2.1 | |
| echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile | |
| # Install dependencies using Spack | |
| - name: install-dependencies-with-spack | |
| if: steps.cache-env.outputs.cache-hit != 'true' | |
| run: | | |
| git clone -c feature.manyFiles=true https://github.com/NOAA-EMC/spack.git | |
| source spack/share/spack/setup-env.sh | |
| spack env create upp-env UPP/ci/spack.yaml | |
| spack env activate upp-env | |
| spack compiler find | |
| sudo apt install cmake | |
| spack external find | |
| spack add intel-oneapi-mpi | |
| spack concretize | |
| spack install --dirty -v --fail-fast | |
| spack clean --all | |
| build: | |
| needs: setup | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: checkout-upp | |
| uses: actions/checkout@v2 | |
| with: | |
| path: UPP | |
| - name: install-intel | |
| run: | | |
| echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile | |
| - name: cache-env | |
| id: cache-env | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| spack | |
| ~/.spack | |
| /opt/intel | |
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('UPP/ci/spack.yaml') }} | |
| - name: build-upp | |
| run: | | |
| source spack/share/spack/setup-env.sh | |
| spack env activate upp-env | |
| export CC=mpiicc | |
| export FC=mpiifort | |
| cd UPP | |
| mkdir -p build && cd build | |
| cmake -DENABLE_DOCS=ON -DCMAKE_INSTALL_PREFIX=../install .. | |
| make -j2 VERBOSE=1 | |
| make install |