Implement CCPPized check_energy_chng and check_energy_fix (#145)

Fixes #114 

* Companion PR in CAM: ESCOMP/CAM#1180
* Companion PR in CAM-SIMA: ESCOMP/CAM-SIMA#316

This PR fixes the following NCAR/atmospheric_physics Github issues: #114

- Implements check_energy_chng. The routine computes total energies
using physics and dycore formula and takes in boundary fluxes of vapor,
liquid+ice, ice, sensible heat, and writes to log significant energy
conservation errors.
In order to take in the scheme name and fluxes from the last calling
physics scheme (usually zero) a check_energy_zero_fluxes has to be ran
before the scheme, then the physics scheme to be checked, then
check_energy_chng.

- Implements check_energy_fix. The routine computes the heating rate
required for global mean total energy conservation which is later
applied by apply_heating_rate.
Supporting routines include the global mean calculator for total energy
(check_energy_gmean) - stored in separate folder to prevent CAM from
building it.
The global means are very useful for diagnosing model state (as the
computed energy numbers include all model state incl. constituents)
through a simple one-line printout. check_energy_gmean_diagnostics
implements this.
At the end of the timestep check_energy_save_teout has to be ran in
order to save total energies at the end of the timestep for use in the
next timestep.

- Diagnostics of intermediate quantities used in
check_energy_diagnostics.

List all existing files that have been added (A), modified (M), or
deleted (D),
and describe the changes:

```
- Docs:
M       doc/ChangeLog

- check_energy_chng and supporting routines:
A       schemes/check_energy/check_energy_chng.F90
A       schemes/check_energy/check_energy_chng.meta
A       schemes/check_energy/check_energy_chng_namelist.xml
A       schemes/check_energy/check_energy_scaling.F90
A       schemes/check_energy/check_energy_scaling.meta
A       schemes/check_energy/check_energy_zero_fluxes.F90
A       schemes/check_energy/check_energy_zero_fluxes.meta

- check_energy_fix and supporting routines:
A       schemes/check_energy/check_energy_fix.F90
A       schemes/check_energy/check_energy_fix.meta
A       schemes/check_energy/check_energy_gmean/check_energy_gmean.F90
A       schemes/check_energy/check_energy_gmean/check_energy_gmean.meta
A       schemes/check_energy/check_energy_save_teout.F90
A       schemes/check_energy/check_energy_save_teout.meta

- check_energy related diagnostics:
A       schemes/sima_diagnostics/check_energy_diagnostics.F90
A       schemes/sima_diagnostics/check_energy_diagnostics.meta

- check_energy_gmean "nstep, te" atm.log output:
A       schemes/sima_diagnostics/check_energy_gmean_diagnostics.F90
A       schemes/sima_diagnostics/check_energy_gmean_diagnostics.meta

- test SDF including all functionality:
A       test/test_suites/suite_check_energy.xml
```

List and Describe any test failures: N/A

Summarize any changes to answers: none

doc/ChangeLog

@@ -1,5 +1,77 @@
 ===============================================================
 
+Tag name: atmos_phys0_07_000
+Originator(s): jimmielin
+Date: November 18, 2024
+One-line Summary: Implement CCPPized check_energy_chng and check_energy_fix
+Github PR URL:
+
+This PR fixes the following NCAR/atmospheric_physics Github issues: #114
+
+- Implements check_energy_chng. The routine computes total energies using physics and dycore formula and takes in boundary fluxes of vapor, liquid+ice, ice, sensible heat, and writes to log significant energy conservation errors.
+In order to take in the scheme name and fluxes from the last calling physics scheme (usually zero) a check_energy_zero_fluxes has to be ran before the scheme, then the physics scheme to be checked, then check_energy_chng.
+
+- Implements check_energy_fix. The routine computes the heating rate required for global mean total energy conservation which is later applied by apply_heating_rate.
+Supporting routines include the global mean calculator for total energy (check_energy_gmean) - stored in separate folder to prevent CAM from building it.
+The global means are very useful for diagnosing model state (as the computed energy numbers include all model state incl. constituents) through a simple one-line printout. check_energy_gmean_diagnostics implements this.
+At the end of the timestep check_energy_save_teout has to be ran in order to save total energies at the end of the timestep for use in the next timestep.
+
+- Diagnostics of intermediate quantities used in check_energy_diagnostics.
+
+- Implements dycore_energy_consistency_adjust which adjusts temperature and temperature tendencies for the MPAS and SE dynamical cores.
+
+Code reviewed by:
+
+List all existing files that have been added (A), modified (M), or deleted (D),
+and describe the changes:
+
+- Docs:
+M       doc/ChangeLog
+
+- check_energy_chng and supporting routines:
+A       schemes/check_energy/check_energy_chng.F90
+A       schemes/check_energy/check_energy_chng.meta
+A       schemes/check_energy/check_energy_chng_namelist.xml
+A       schemes/check_energy/check_energy_scaling.F90
+A       schemes/check_energy/check_energy_scaling.meta
+A       schemes/check_energy/check_energy_zero_fluxes.F90
+A       schemes/check_energy/check_energy_zero_fluxes.meta
+
+- check_energy_fix and supporting routines:
+A       schemes/check_energy/check_energy_fix.F90
+A       schemes/check_energy/check_energy_fix.meta
+A       schemes/check_energy/check_energy_gmean/check_energy_gmean.F90
+A       schemes/check_energy/check_energy_gmean/check_energy_gmean.meta
+A       schemes/check_energy/check_energy_save_teout.F90
+A       schemes/check_energy/check_energy_save_teout.meta
+
+- check_energy related diagnostics:
+A       schemes/sima_diagnostics/check_energy_diagnostics.F90
+A       schemes/sima_diagnostics/check_energy_diagnostics.meta
+
+- check_energy_gmean "nstep, te" atm.log output:
+A       schemes/sima_diagnostics/check_energy_gmean_diagnostics.F90
+A       schemes/sima_diagnostics/check_energy_gmean_diagnostics.meta
+
+- dycore_energy_consistency_adjust and applications in simple physics:
+A       schemes/check_energy/dycore_energy_consistency_adjust.F90
+A       schemes/check_energy/dycore_energy_consistency_adjust.meta
+M       suites/suite_held_suarez_1994.xml
+M       suites/suite_kessler.xml
+
+- add check_energy to SDFs:
+M       suites/suite_cam7.xml
+
+- adiabatic SDF:
+A       suites/suite_adiabatic.xml
+
+
+List and Describe any test failures: N/A
+
+Summarize any changes to answers: none
+
+===============================================================
+
 Tag name:
 Originator(s): jimmielin
 Date: October 17, 2024