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Various documentation updates#2230

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samsrabin merged 70 commits intomasterESCOMP/CTSM:masterfrom docs-weekESCOMP/CTSM:docs-weekCopy head branch name to clipboardNov 3, 2023

+744-385

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Commits on Jun 28, 2022

• Fix links in introduction

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Commits on Sep 15, 2023

• add entry to special cases

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Commits on Oct 6, 2023

• Minor text fixes.

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• Markup fixes.

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• Remove hyphens from title.

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• Use complete relative path to cime/scripts from top level of checkout.

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• Remove EOL whitespace.

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• Merge pull request #3 from samsrabin/excess-ice-docs-ssr

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Commits on Oct 19, 2023

• Merge tag 'ctsm5.1.dev144' into docs-week

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Commits on Oct 24, 2023

• Convert crop phenology parameters table to list-table.

  samsrabin

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• Improve some elements of crop phenology parameters table.

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• Resolve documentation problems in issue #2136

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• Convert crop phenology parameters table notes to bulleted list.

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• Crop phen. params table notes: Improve min/max planting dates.

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• Crop phen. params table notes: Add ref. for Tp variables.

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• Crop phen. params table notes: Improve GDDmin.

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• Crop phen. params table notes: Improve GDDmat.

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• Crop phen. params table notes: Add mxmat.

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• Crop phen. params table notes: Remove unneeded line.

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• Crop phen. params table notes: Add z-top-max ref.

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• Crop phen. params table notes: Add SLA ref.

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• Crop phen. params table notes: Add grperc ref.

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• Crop phen. params table notes: Add chi_L ref.

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• Crop phen. params table notes: Added flnr ref.

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• Crop phen. params table notes: Added fcur ref.

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• Crop phen. params table notes: Improve GDDmat clarity, reduce redundancy.

  samsrabin

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• Resolve documentation issues identified in issue #872

  olyson

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• Crops & irrigation: Capitalize PFT.

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• Crop & irrigation: Typo/formatting fixes.

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• Crop & irrigation Tech Note: mention sowing window start/end date input files.

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• User's Guide: Add instructions for running w/ custom crop calendars.

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• Crop & irrigation Tech Note: Use GRAINC_TO_FOOD_ANN.

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• Resolve documentation problems identified in issue #993

  olyson

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• Crops/irrigation Tech Note: Crop calendars in "features since 5.0"

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• Resolve documentation problems identified in issue #2194

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Commits on Oct 25, 2023

• Merge remote-tracking branch 'upstream/fix_doc_links' into docs-user-guide-links

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• Move some section labels to fix rendering (maybe just in VSCode).

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• UG Introduction: Fix link(s) to ChangeLog file(s).

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• Remove version number from what-is-new-with-clm5_0 label.

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• UG Quickstart: Fix rendering of a list.

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• UG Overview: Fix CLM-URL links in 1.1.3.

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• UG Introduction: Fixed links re: spinup/initial conditions.

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• UG Getting Help: Fix CLM-URL links.

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• UG Quickstart: Make a bulleted list.

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Commits on Oct 26, 2023

• Changes in response to review.

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• UG Quickstart: Fix CLM-URL links.

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• UG running-PTCLM: Fix CLM-URL links.

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• UG running-single-points: Fix CLM-URL links.

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• UG Running Single Point Configurations: Cleanup and removal of an outdated note.

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• UG running-single-points: Fix remaining CLM-URL links.

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Commits on Oct 27, 2023

• UG running-special-cases: Fix CLM-URL links.

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• UG: Deleted references to tables that no longer exist in the docs.

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• UG choosing a compset: Replace outdated ref to -user_compset with link to longnames.

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• UG setting-up-and-running-a-case: Fix CLM-URL links.

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• UG: Ensure all labels come after include of substitutions.rst.

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• UG input for surface data gen: Removed manual section numbering.

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• UG: Removed ref to nonexistent "Running mksurfdata.pl" section.

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• UG: Deleted a duplicate file.

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• UG testing and using-clm-tools: Fix CLM-URL links.

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• Fix various issues in docs identified during HTML build.

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• Add a blank line after a list.

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• UG: single-point setups don't always have MPILIB=mpi-serial by default.

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• UG: Mention compset testing/validation info.

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Commits on Oct 30, 2023

• User's Guide, testing: Fix/fill Build-namelist section.

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Commits on Nov 3, 2023

• Merge pull request #2161 from mvdebolskiy/excess-ice-docs

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• Merge pull request #2220 from olyson/mydocs-week

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• Merge branch 'docs-week' into docs-crops-2023-10

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• Merge pull request #2221 from ESCOMP/docs-crops-2023-10

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• Merge pull request #2225 from samsrabin/docs-user-guide-links

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• Merge pull request #2226 from samsrabin/docs-bld-nml-test

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