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add new JRA 1.5 streams for datm and drof #304

Merged
merged 5 commits into from
Oct 30, 2024
Merged

add new JRA 1.5 streams for datm and drof #304

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78f7c21
add new JRA 1.5 streams for datm and drof
alperaltuntas Aug 31, 2024
0c37744
fix input_data_list generation for when multiple stream_datafiles ent…
alperaltuntas Oct 25, 2024
37b1a13
extend jra v1.5 to 2023
alperaltuntas Oct 25, 2024
573df5d
Merge branch 'main' into add_jra1_5
jedwards4b Oct 25, 2024
faa59db
fix (for real) input_data_list generation for when multiple stream_da…
alperaltuntas Oct 25, 2024
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3 changes: 3 additions & 0 deletions cime_config/stream_cdeps.py
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Original file line number Diff line number Diff line change
Expand Up @@ -242,6 +242,7 @@ def create_stream_xml(
elif node_name == "stream_datafiles":
# Get the resolved stream data files
stream_vars[node_name] = ""
stream_datafiles_list = [] # to join stream_datafiles if multiple entries are present
stream_datafiles = ""
for child in self.get_children(root=node):
if (
Expand Down Expand Up @@ -306,6 +307,8 @@ def create_stream_xml(
stream_datafiles.split("\n"), "file"
)
# endif
stream_datafiles_list.append(stream_datafiles)
stream_datafiles = "\n".join(stream_datafiles_list)
elif node_name in xml_scalar_names:
attributes["model_grid"] = case.get_value("GRID")
attributes["compset"] = case.get_value("COMPSET")
Expand Down
6 changes: 4 additions & 2 deletions datm/cime_config/config_component.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@
This file may have atm desc entries.
-->
<description modifier_mode="1">
<desc atm="DATM[%QIA][%WISOQIA][%CRU][%CRUv7][%GSWP3v1][%MOSARTTEST][%NLDAS2][%CPLHIST][%1PT][%NYF][%IAF][%JRA][%JRA-1p4-2018][%JRA-RYF8485][%JRA-RYF9091][%JRA-RYF0304][%SIMPLE]"> Data driven ATM </desc>
<desc atm="DATM[%QIA][%WISOQIA][%CRU][%CRUv7][%GSWP3v1][%MOSARTTEST][%NLDAS2][%CPLHIST][%1PT][%NYF][%IAF][%JRA][%JRA-1p4-2018][%JRA-1p5-2023][%JRA-RYF8485][%JRA-RYF9091][%JRA-RYF0304][%SIMPLE]"> Data driven ATM </desc>
<desc option="QIA"> QIAN data set </desc>
<desc option="WISOQIA">QIAN with water isotopes</desc>
<desc option="CRU"> CRUNCEP data set </desc>
Expand All @@ -23,6 +23,7 @@
<desc option="IAF">COREv2 interannual forcing</desc>
<desc option="JRA">interannual JRA55 forcing</desc>
<desc option="JRA-1p4-2018">interannual JRA55 forcing, v1.4, through 2018</desc>
<desc option="JRA-1p5-2023">interannual JRA55 forcing, v1.5, through 2023</desc>
<desc option="JRA-RYF8485"> JRA55 Repeat Year Forcing v1.3 1984-1985</desc>
<desc option="JRA-RYF9091"> JRA55 Repeat Year Forcing v1.3 1990-1991</desc>
<desc option="JRA-RYF0304"> JRA55 Repeat Year Forcing v1.3 2003-2004</desc>
Expand All @@ -41,7 +42,7 @@

<entry id="DATM_MODE">
<type>char</type>
<valid_values>CORE2_NYF,CORE2_IAF,CLM_QIAN,CLM_QIAN_WISO,1PT,CLMCRUNCEP,CLMCRUNCEPv7,CLMGSWP3v1,CLMNLDAS2,CPLHIST,CORE_IAF_JRA,CORE_IAF_JRA_1p4_2018,ERA5,SIMPLE</valid_values>
<valid_values>CORE2_NYF,CORE2_IAF,CLM_QIAN,CLM_QIAN_WISO,1PT,CLMCRUNCEP,CLMCRUNCEPv7,CLMGSWP3v1,CLMNLDAS2,CPLHIST,CORE_IAF_JRA,CORE_IAF_JRA_1p4_2018,CORE_IAF_JRA_1p5_2023,ERA5,SIMPLE</valid_values>
<default_value>CORE2_NYF</default_value>
<group>run_component_datm</group>
<file>env_run.xml</file>
Expand All @@ -54,6 +55,7 @@
<value compset="DATM%IAF">CORE2_IAF</value>
<value compset="DATM%JRA">CORE_IAF_JRA</value>
<value compset="DATM%JRA-1p4-2018">CORE_IAF_JRA_1p4_2018</value>
<value compset="DATM%JRA-1p5-2023">CORE_IAF_JRA_1p5_2023</value>
<value compset="DATM%QIA">CLM_QIAN</value>
<value compset="DATM%WISOQIA">CLM_QIAN_WISO</value>
<value compset="DATM%CRUv7">CLMCRUNCEPv7</value>
Expand Down
3 changes: 3 additions & 0 deletions datm/cime_config/namelist_definition_datm.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -55,6 +55,9 @@
<value datm_mode="CORE_IAF_JRA_1p4_2018" >
CORE_IAF_JRA_1p4_2018.GCGCS.PREC,CORE_IAF_JRA_1p4_2018.GISS.LWDN,CORE_IAF_JRA_1p4_2018.GISS.SWDN,CORE_IAF_JRA_1p4_2018.NCEP.Q_10,CORE_IAF_JRA_1p4_2018.NCEP.SLP_,CORE_IAF_JRA_1p4_2018.NCEP.T_10,CORE_IAF_JRA_1p4_2018.NCEP.U_10,CORE_IAF_JRA_1p4_2018.NCEP.V_10
</value>
<value datm_mode="CORE_IAF_JRA_1p5_2023" >
CORE_IAF_JRA_1p5_2023.GCGCS.PREC,CORE_IAF_JRA_1p5_2023.GISS.LWDN,CORE_IAF_JRA_1p5_2023.GISS.SWDN,CORE_IAF_JRA_1p5_2023.NCEP.Q_10,CORE_IAF_JRA_1p5_2023.NCEP.SLP_,CORE_IAF_JRA_1p5_2023.NCEP.T_10,CORE_IAF_JRA_1p5_2023.NCEP.U_10,CORE_IAF_JRA_1p5_2023.NCEP.V_10
</value>
<value datm_mode="CORE_RYF8485_JRA">
CORE_RYF8485_JRA.GISS.LWDN,CORE_RYF8485_JRA.GISS.SWDN,CORE_RYF8485_JRA.GCGCS,CORE_RYF8485_JRA.NCEP
</value>
Expand Down
291 changes: 284 additions & 7 deletions datm/cime_config/stream_definition_datm.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -33,13 +33,14 @@
CLMGSWP3v1 = Run with the CLM GSWP3 V1 forcing (force CLM)
CLMNLDAS2 = Run with the CLM NLDAS2 regional forcing valid from 1980 to 2018 (force CLM)
1PT = Run with supplied single point data (force CLM)
CORE2_NYF = CORE2 normal year forcing (for forcing POP and CICE)
CORE2_IAF = CORE2 intra-annual year forcing (for forcing POP and CICE)
CORE_IAF_JRA = JRA55 intra-annual year forcing (for forcing POP and CICE)
CORE_IAF_JRA_1p4_2018 = JRA55 intra-annual year forcing, v1.4, through 2018 (for forcing POP and CICE)
CORE_RYF8485_JRA = JRA55 repeat year forcing, v1.3, 1984-1985 (for forcing POP and CICE)
CORE_RYF9091_JRA = JRA55 repeat year forcing, v1.3, 1990-1991 (for forcing POP and CICE)
CORE_RYF0304_JRA = JRA55 repeat year forcing, v1.3, 2003-2004 (for forcing POP and CICE)
CORE2_NYF = CORE2 normal year forcing (for forcing MOM6 and CICE)
CORE2_IAF = CORE2 intra-annual year forcing (for forcing MOM6 and CICE)
CORE_IAF_JRA = JRA55 intra-annual year forcing (for forcing MOM6 and CICE)
CORE_IAF_JRA_1p4_2018 = JRA55 intra-annual year forcing, v1.4, through 2018 (for forcing MOM6 and CICE)
CORE_IAF_JRA_1p5_2023 = JRA55 intra-annual year forcing, v1.5, through 2023 (for forcing MOM6 and CICE)
CORE_RYF8485_JRA = JRA55 repeat year forcing, v1.3, 1984-1985 (for forcing MOM6 and CICE)
CORE_RYF9091_JRA = JRA55 repeat year forcing, v1.3, 1990-1991 (for forcing MOM6 and CICE)
CORE_RYF0304_JRA = JRA55 repeat year forcing, v1.3, 2003-2004 (for forcing MOM6 and CICE)
Comment on lines +38 to +43
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Is there a reason to have the CORE_ prefix here? It's different than the CORE2_ prefix used for CORE forcing, but it's similar enough to feel like maybe it's not necessary?

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I can't remember the exact reason but it was a desired prefix at the time when we first introduced JRA forcing (i.e., it was intentional).

ERA5 = ERA5 intra-annual year forcing
NEON = Run with forcing from NEON tower data
PLUMBER2 = Run with forcing from PLUMBER2 tower data
Expand Down Expand Up @@ -2462,6 +2463,282 @@
<stream_readmode>single</stream_readmode>
</stream_entry>

<!-- ================================ -->
<!-- datm_mode CORE_IAF_JRA_1p5_2023 -->
<!-- ================================ -->

<stream_entry name="CORE_IAF_JRA_1p5_2023.GCGCS.PREC">
<stream_meshfile>
<meshfile>$DIN_LOC_ROOT/share/meshes/TL319_151007_ESMFmesh.nc</meshfile>
</stream_meshfile>
<stream_datafiles>
<file first_year="1958" last_year="2020">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.prec.TL319.%y.210504.nc</file>
<file first_year="2021" last_year="2021">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.prec.TL319.%y.220505.nc</file>
<file first_year="2022" last_year="2022">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.prec.TL319.%y.230718.nc</file>
<file first_year="2023" last_year="2023">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.prec.TL319.%y.240531.nc</file>
</stream_datafiles>
<stream_datavars>
<var>prec Faxa_prec</var>
</stream_datavars>
<stream_lev_dimname>null</stream_lev_dimname>
<stream_mapalgo>
<mapalgo>bilinear</mapalgo>
</stream_mapalgo>
<stream_vectors>null</stream_vectors>
<stream_year_align>1</stream_year_align>
<stream_year_first>1958</stream_year_first>
<stream_year_last>2023</stream_year_last>
<stream_offset>0</stream_offset>
<stream_tintalgo>
<tintalgo>linear</tintalgo>
</stream_tintalgo>
<stream_taxmode>
<taxmode>cycle</taxmode>
</stream_taxmode>
<stream_dtlimit>
<dtlimit>1.5</dtlimit>
</stream_dtlimit>
<stream_readmode>single</stream_readmode>
</stream_entry>

<stream_entry name="CORE_IAF_JRA_1p5_2023.GISS.LWDN">
<stream_meshfile>
<meshfile>$DIN_LOC_ROOT/share/meshes/TL319_151007_ESMFmesh.nc</meshfile>
</stream_meshfile>
<stream_datafiles>
<file first_year="1958" last_year="2020">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.lwdn.TL319.%y.210504.nc</file>
<file first_year="2021" last_year="2021">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.lwdn.TL319.%y.220505.nc</file>
<file first_year="2022" last_year="2022">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.lwdn.TL319.%y.230718.nc</file>
<file first_year="2023" last_year="2023">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.lwdn.TL319.%y.240531.nc</file>
</stream_datafiles>
<stream_datavars>
<var>lwdn Faxa_lwdn</var>
</stream_datavars>
<stream_lev_dimname>null</stream_lev_dimname>
<stream_mapalgo>
<mapalgo>bilinear</mapalgo>
</stream_mapalgo>
<stream_vectors>null</stream_vectors>
<stream_year_align>1</stream_year_align>
<stream_year_first>1958</stream_year_first>
<stream_year_last>2023</stream_year_last>
<stream_offset>0</stream_offset>
<stream_tintalgo>
<tintalgo>linear</tintalgo>
</stream_tintalgo>
<stream_taxmode>
<taxmode>cycle</taxmode>
</stream_taxmode>
<stream_dtlimit>
<dtlimit>1.5</dtlimit>
</stream_dtlimit>
<stream_readmode>single</stream_readmode>
</stream_entry>

<stream_entry name="CORE_IAF_JRA_1p5_2023.GISS.SWDN">
<stream_meshfile>
<meshfile>$DIN_LOC_ROOT/share/meshes/TL319_151007_ESMFmesh.nc</meshfile>
</stream_meshfile>
<stream_datafiles>
<file first_year="1958" last_year="2020">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.swdn.TL319.%y.210504.nc</file>
<file first_year="2021" last_year="2021">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.swdn.TL319.%y.220505.nc</file>
<file first_year="2022" last_year="2022">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.swdn.TL319.%y.230718.nc</file>
<file first_year="2023" last_year="2023">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.swdn.TL319.%y.240531.nc</file>
</stream_datafiles>
<stream_datavars>
<var>swdn Faxa_swdn</var>
</stream_datavars>
<stream_lev_dimname>null</stream_lev_dimname>
<stream_mapalgo>
<mapalgo>bilinear</mapalgo>
</stream_mapalgo>
<stream_vectors>null</stream_vectors>
<stream_year_align>1</stream_year_align>
<stream_year_first>1958</stream_year_first>
<stream_year_last>2023</stream_year_last>
<stream_offset>-5400</stream_offset>
<stream_tintalgo>
<tintalgo>coszen</tintalgo>
</stream_tintalgo>
<stream_taxmode>
<taxmode>cycle</taxmode>
</stream_taxmode>
<stream_dtlimit>
<dtlimit>1.5</dtlimit>
</stream_dtlimit>
<stream_readmode>single</stream_readmode>
</stream_entry>

<stream_entry name="CORE_IAF_JRA_1p5_2023.NCEP.Q_10">
<stream_meshfile>
<meshfile>$DIN_LOC_ROOT/share/meshes/TL319_151007_ESMFmesh.nc</meshfile>
</stream_meshfile>
<stream_datafiles>
<file first_year="1958" last_year="2020">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.q_10.TL319.%y.210504.nc</file>
<file first_year="2021" last_year="2021">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.q_10.TL319.%y.220505.nc</file>
<file first_year="2022" last_year="2022">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.q_10.TL319.%y.230718.nc</file>
<file first_year="2023" last_year="2023">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.q_10.TL319.%y.240531.nc</file>
</stream_datafiles>
<stream_datavars>
<var>q_10 Sa_shum</var>
</stream_datavars>
<stream_lev_dimname>null</stream_lev_dimname>
<stream_mapalgo>
<mapalgo>bilinear</mapalgo>
</stream_mapalgo>
<stream_vectors>null</stream_vectors>
<stream_year_align>1</stream_year_align>
<stream_year_first>1958</stream_year_first>
<stream_year_last>2023</stream_year_last>
<stream_offset>0</stream_offset>
<stream_tintalgo>
<tintalgo>linear</tintalgo>
</stream_tintalgo>
<stream_taxmode>
<taxmode>cycle</taxmode>
</stream_taxmode>
<stream_dtlimit>
<dtlimit>1.5</dtlimit>
</stream_dtlimit>
<stream_readmode>single</stream_readmode>
</stream_entry>

<stream_entry name="CORE_IAF_JRA_1p5_2023.NCEP.SLP_">
<stream_meshfile>
<meshfile>$DIN_LOC_ROOT/share/meshes/TL319_151007_ESMFmesh.nc</meshfile>
</stream_meshfile>
<stream_datafiles>
<file first_year="1958" last_year="2020">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.slp.TL319.%y.210504.nc</file>
<file first_year="2021" last_year="2021">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.slp.TL319.%y.220505.nc</file>
<file first_year="2022" last_year="2022">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.slp.TL319.%y.230718.nc</file>
<file first_year="2023" last_year="2023">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.slp.TL319.%y.240531.nc</file>
</stream_datafiles>
<stream_datavars>
<var>slp Sa_pslv</var>
</stream_datavars>
<stream_lev_dimname>null</stream_lev_dimname>
<stream_mapalgo>
<mapalgo>bilinear</mapalgo>
</stream_mapalgo>
<stream_vectors>null</stream_vectors>
<stream_year_align>1</stream_year_align>
<stream_year_first>1958</stream_year_first>
<stream_year_last>2023</stream_year_last>
<stream_offset>0</stream_offset>
<stream_tintalgo>
<tintalgo>linear</tintalgo>
</stream_tintalgo>
<stream_taxmode>
<taxmode>cycle</taxmode>
</stream_taxmode>
<stream_dtlimit>
<dtlimit>1.5</dtlimit>
</stream_dtlimit>
<stream_readmode>single</stream_readmode>
</stream_entry>

<stream_entry name="CORE_IAF_JRA_1p5_2023.NCEP.T_10">
<stream_meshfile>
<meshfile>$DIN_LOC_ROOT/share/meshes/TL319_151007_ESMFmesh.nc</meshfile>
</stream_meshfile>
<stream_datafiles>
<file first_year="1958" last_year="2020">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.t_10.TL319.%y.210504.nc</file>
<file first_year="2021" last_year="2021">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.t_10.TL319.%y.220505.nc</file>
<file first_year="2022" last_year="2022">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.t_10.TL319.%y.230718.nc</file>
<file first_year="2023" last_year="2023">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.t_10.TL319.%y.240531.nc</file>
</stream_datafiles>
<stream_datavars>
<var>t_10 Sa_tbot</var>
</stream_datavars>
<stream_lev_dimname>null</stream_lev_dimname>
<stream_mapalgo>
<mapalgo>bilinear</mapalgo>
</stream_mapalgo>
<stream_vectors>null</stream_vectors>
<stream_year_align>1</stream_year_align>
<stream_year_first>1958</stream_year_first>
<stream_year_last>2023</stream_year_last>
<stream_offset>0</stream_offset>
<stream_tintalgo>
<tintalgo>linear</tintalgo>
</stream_tintalgo>
<stream_taxmode>
<taxmode>cycle</taxmode>
</stream_taxmode>
<stream_dtlimit>
<dtlimit>1.5</dtlimit>
</stream_dtlimit>
<stream_readmode>single</stream_readmode>
</stream_entry>

<stream_entry name="CORE_IAF_JRA_1p5_2023.NCEP.U_10">
<stream_meshfile>
<meshfile>$DIN_LOC_ROOT/share/meshes/TL319_151007_ESMFmesh.nc</meshfile>
</stream_meshfile>
<stream_datafiles>
<file first_year="1958" last_year="2020">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.u_10.TL319.%y.210504.nc</file>
<file first_year="2021" last_year="2021">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.u_10.TL319.%y.220505.nc</file>
<file first_year="2022" last_year="2022">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.u_10.TL319.%y.230718.nc</file>
<file first_year="2023" last_year="2023">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.u_10.TL319.%y.240531.nc</file>
</stream_datafiles>
<stream_datavars>
<var>u_10 Sa_u</var>
</stream_datavars>
<stream_lev_dimname>null</stream_lev_dimname>
<stream_mapalgo>
<mapalgo>bilinear</mapalgo>
</stream_mapalgo>
<stream_vectors>null</stream_vectors>
<stream_year_align>1</stream_year_align>
<stream_year_first>1958</stream_year_first>
<stream_year_last>2023</stream_year_last>
<stream_offset>0</stream_offset>
<stream_tintalgo>
<tintalgo>linear</tintalgo>
</stream_tintalgo>
<stream_taxmode>
<taxmode>cycle</taxmode>
</stream_taxmode>
<stream_dtlimit>
<dtlimit>1.5</dtlimit>
</stream_dtlimit>
<stream_readmode>single</stream_readmode>
</stream_entry>

<stream_entry name="CORE_IAF_JRA_1p5_2023.NCEP.V_10">
<stream_meshfile>
<meshfile>$DIN_LOC_ROOT/share/meshes/TL319_151007_ESMFmesh.nc</meshfile>
</stream_meshfile>
<stream_datafiles>
<file first_year="1958" last_year="2020">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.v_10.TL319.%y.210504.nc</file>
<file first_year="2021" last_year="2021">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.v_10.TL319.%y.220505.nc</file>
<file first_year="2022" last_year="2022">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.v_10.TL319.%y.230718.nc</file>
<file first_year="2023" last_year="2023">$DIN_LOC_ROOT/ocn/jra55/v1.5_noleap/JRA.v1.5.v_10.TL319.%y.240531.nc</file>
</stream_datafiles>
<stream_datavars>
<var>v_10 Sa_v</var>
</stream_datavars>
<stream_lev_dimname>null</stream_lev_dimname>
<stream_mapalgo>
<mapalgo>bilinear</mapalgo>
</stream_mapalgo>
<stream_vectors>null</stream_vectors>
<stream_year_align>1</stream_year_align>
<stream_year_first>1958</stream_year_first>
<stream_year_last>2023</stream_year_last>
<stream_offset>0</stream_offset>
<stream_tintalgo>
<tintalgo>linear</tintalgo>
</stream_tintalgo>
<stream_taxmode>
<taxmode>cycle</taxmode>
</stream_taxmode>
<stream_dtlimit>
<dtlimit>1.5</dtlimit>
</stream_dtlimit>
<stream_readmode>single</stream_readmode>
</stream_entry>

<!-- ================================ -->
<!-- datm_mode CORE_RYF8485_JRA -->
<!-- ================================ -->
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