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fix: reorder the lookup to look at cpc models next if mikado models a…
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…re absent in the metrics_info.txt file to get the full list of models
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gemygk committed Feb 14, 2024
1 parent fbbb0c8 commit 3d9d22f
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion minos/scripts/generate_metrics.py
Original file line number Diff line number Diff line change
Expand Up @@ -187,8 +187,8 @@ def read_busco(f, seen=set(), score_complete=1, score_fragmented=0.25):
"mikado",
{"metrics": ["nF1", "jF1", "eF1", "aF1"], "parser": read_mikado_refmap},
),
("blast", {"metrics": ["qCov", "tCov"], "parser": read_blast}),
("cpc", {"metrics": [""], "parser": read_cpc}),
("blast", {"metrics": ["qCov", "tCov"], "parser": read_blast}),
("expression", {"metrics": [""], "parser": read_kallisto}),
("repeat", {"metrics": ["cov"], "parser": read_rm_repeats}),
("busco", {"metrics": [""], "parser": read_busco}),
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