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104 update mongodb #821

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104 update mongodb #821

wants to merge 201 commits into from

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giraygi
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@giraygi giraygi commented Jan 9, 2025

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giraygi added 30 commits February 15, 2024 17:27
@giraygi
enabled all rest controllers
bd25235
@giraygi
added imports
8811ab9
@giraygi
added skos tree generation controllers
865418e
@giraygi
enabled hastopconcept option by making conceptSchema a term
5db94ef
@giraygi
implemented graph definition call for visualization
fb211c8
@giraygi
removed yet to be introduced caching for now and moved graph method b…
d2df44f 
…elow
@giraygi
renamed call signatures with respect to EBI conventions in EBISPOT#625
c7f8de2
@giraygi
handled null relations for some ontologies in EBISPOT#625 and #1
5080ff8
@giraygi
changed skos variable name in the config file
c249078
@giraygi
added skos tree configuration parameters for frontend in EBISPOT#625 …
0f88d25 
…and #1
@giraygi
added ontology filter methods based on ontology metadata
4fd8952
@giraygi
enabled collection and subject variables in config
bc6edaf
@giraygi
added composite classification variable for filtering
02bc447
@giraygi
enabled filtering from composite type
38265db
@giraygi
filtering for filterby, search, select, suggest methods
34b8be8
@giraygi
added classifications as a composite variable to the config
367ff54
@giraygi
implemented call for listing available schema keys
c551e67
@giraygi
implemented schema values method
c84cca6
@giraygi
paginated the schemakeys and schemavalues methods
49af55c
@giraygi
enabled all rest controllers
6fc77ea
@giraygi
added imports
c3b37fa
@giraygi
added config file for testing in #3
0151b49
@giraygi
moved sample labeled config to configs directory in #3
111b42a
@giraygi
renamed test config file and corrected variable name inside it for #3
285857b
@giraygi
refactored and added repo_url config variable
e87dcd3
@giraygi
added composite license variable in config for #3
071cdfc
@giraygi
refactored and handled null cases
e56e916
@giraygi
implemented statistics method enhanced with filtering for #3
757cd4e
@giraygi
refactored statistics methods
35a0409
@giraygi
implemented call that retrieves all statistics with respect to schema
09b268b
deepananbu and others added 29 commits November 12, 2024 14:55
@deepananbu
added code to retrieve FullJSTree with viewMode and siblings. Fixes #74
f4463e8
@giraygi
Merge pull request #89 from TIBHannover/59-update-solr-and-neo4j
055c2d1 
updated neo4j and solr and made their download optional for #59
@giraygi
ontology filters are converted to default COMPOSITE in v2 statistics …
a8bd1ea 
…for #91
@giraygi
computed last loaded time for subset of ontologies in #91
6246cd3
@giraygi
handled null and empty cases in composite filter for #91
38bc3f8
@deepananbu
added logic to handle property fullTree. Fixes #74
2bdb9db
@giraygi
removed unnecessary parameter from allstatsbyschema endpoint for #91
585aa68
@giraygi
Merge pull request #92 from TIBHannover/91-stats-endpoints
2b3086c 
ontology filters are converted to default COMPOSITE in v2 statistics …
@giraygi
readded schema parameter on allstatsbyschema endpoint for #91
9afe62a
@giraygi
Merge pull request #94 from TIBHannover/91-stats-endpoints
a115771 
readded schema parameter on allstatsbyschema endpoint for #91
@giraygi
used annotation extractor class for mapping in #96
ba1a070
@giraygi
Merge pull request #97 from TIBHannover/96-annotations-field-is-null-…
55597ca 
…for-ontologies

used annotation extractor class for mapping in #96
@giraygi
added relatedfrom and equivalentclasses endpoint for #98
a91be29
@deepananbu
updated logic to get label for relationship. Fixes #99
d8d7890
@giraygi
Merge pull request #95 from TIBHannover/74-viewmode=all-does-not-work…
79bca06 
…-in-ols4-v1

74 viewmode=all does not work in ols4 v1
@giraygi
added a paginated term instances endpoint and made related from and e…
3fce34b 
…quivalent class endpoints paginated for #98
@giraygi
added json endpoint for v1 term in #98
b8a0bcd
@giraygi
added superclasses endpoint for #98
2247f76
@giraygi
removed unnecessary parameters from json endpoint for #98
3542b96
@giraygi
Merge pull request #100 from TIBHannover/99-graph-endpoint-only-retur…
5404548 
…ns-subclassof-relations

updated logic to get label for relationship.
@giraygi
Merge pull request #101 from TIBHannover/98-equivalent-class-and-rela…
cd9a5e4 
…ted-from-endpoints

equivalent classes, related from, superclasses and term instances endpoints for #98
@giraygi
resolved conflicts
6fdcc69
@giraygi
Merge branch 'EBISPOT-dev' into sync4 with unresolved contribution fo…
17ba0c9 
…r RelatedAnnotator.java in commit EBISPOT@270b92b
@deepananbu
merged with EBI latest changes and included fix for fibo
3a5067b
@deepananbu
updated null check for fillerNode
704a3a9
@giraygi
Merge pull request #103 from TIBHannover/resolve-relatedAnnotator-con…
2cb66aa 
…flicts-fiboIngestion

Resolve related annotator conflicts with EBI - fibo ingestion
@giraygi
Merge pull request #102 from TIBHannover/sync4
c011477 
Sync4
@giraygi
updated mongo and neo4j versions for #104
480ac13
@giraygi
updated mongo to latest for #104
8f85fe8
@giraygi giraygi closed this Jan 9, 2025
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@giraygi @deepananbu