UI component, routing, issue templates and biolink (#634)

* Update issue templates

Removed "outdated ontology" tag from Bug report.

* Update issue templates

Template for documentation related issues.

* - Update build widget script

* - Add README.md

* - Update package version

* - Update README.md

* Add routing support for ebi-lookup service (#631)

* - Add routing for ebi lookup service

* - Fix URL routing with env variable

* - Add console log
- Try diff caddy config

* - REVERT - Add console log
- REVERT - Try diff caddy config

* Add biolink (#632)

* Add biolink

* fix typo

---------

Co-authored-by: haider <[email protected]>
Co-authored-by: Haider Iqbal <[email protected]>
Co-authored-by: jamesamcl <[email protected]>

.github/ISSUE_TEMPLATE/bug_report.md

@@ -2,7 +2,7 @@
 name: Bug report
 about: Create a report to help us improve
 title: ''
-labels: bug, outdated ontology
+labels: bug
 assignees: ''
 
 ---

.github/ISSUE_TEMPLATE/incorrect-or-insufficient-documentation-.md

@@ -0,0 +1,18 @@
+---
+name: 'Incorrect or insufficient documentation '
+about: 'Used to report documentation related deficiencies '
+title: ''
+labels: documentation
+assignees: ''
+
+---
+
+**Describe the documentation deficiency**
+
+**Url to existing documentation if applicable**
+
+**What are you trying to do?**
+1. Name of ontology you are trying to access, if applicable:
+2. URL of term you trying to access, if applicable:
+3. Search criteria you are trying to search for: 
+4. Anything else?

ebi_ontologies.json

@@ -1,6 +1,10 @@
 {
   "ontologies": [
-
+	  {
+		  "id": "biolink",
+		  "ontology_purl": "https://github.com/biolink/biolink-model/raw/master/project/owl/biolink_model.owl.ttl",
+		  "homepage": "https://biolink.github.io/biolink-model/"
+	  },
 	  {
          "id": "semapv",
 		  "title": "Semantic Mapping Vocabulary",

frontend/build_widgets.mjs

@@ -15,7 +15,8 @@ build({
 	plugins: [
 	],
 	logLevel: 'info',
-	sourcemap: 'linked'
+	sourcemap: 'linked',
+	format: "esm"
 });
 
 console.log('### Building ols4_widgets.min.js')
@@ -29,7 +30,8 @@ build({
 	],
 	logLevel: 'info',
 	minify: true,
-	sourcemap: 'linked'
+	sourcemap: 'linked',
+	format: "esm"
 });
 
 console.log('### Copying treestyles.css')

frontend/dist_widgets/README.md

@@ -0,0 +1,71 @@
+# OLS4 Widgets
+
+OLS4 Widgets is a library for various ols components. At the moment only one component
+is exposed called `entityTree` which is ideal for seamless ontology visualisations.
+
+## Installation
+
+You can install OLS4 Widgets using npm:
+
+```bash
+npm i @ebi-ols/ols4-widgets
+```
+
+This command installs the latest version of OLS4 widgets and saves it as a dependency in your project's `package.json` file.
+
+## Usage
+
+After installation, you can use OLS4 Widgets in your project by including the necessary files and 
+initializing the widget with a simple javaScript command. Here's a quick example of 
+how to display the chebi tree in a **React** application:
+
+1. Import the dependencies in the js file you want to render the component:
+
+```javascript
+import '@ebi-ols/ols4-widgets/treestyles.css'
+import { useEffect, useRef } from 'react';
+import { createEntityTree } from '@ebi-ols/ols4-widgets/ols4_widgets';
+```
+
+2. Create the function to render the tree:
+
+```javascript
+function EntityTree() {
+
+  let div = useRef()
+
+  useEffect(() => {
+    if(div.current) {
+      createEntityTree({
+        ontologyId: "chebi",
+        apiUrl: "https://www.ebi.ac.uk/ols4/"
+      }, div.current);
+    }
+  }, [div])
+
+  return <div ref={div}></div>
+}
+
+```
+**NOTE:** The main point to notice here is the ontologyId and the apiUrl. The ontologyId is the id of the ontology you want to display and the apiUrl is the base url of the OLS4 API.
+
+3. Add the element where you want the tree to appear in your HTML file:
+
+```javascript
+function App() {
+return (
+<div className="App">
+    <EntityTree />
+</div>
+);
+}
+```
+### Example of the rendered tree
+
+![chebi-tree-render](https://github.com/EBISPOT/ols4/assets/13108541/b9e14c70-6be0-4007-8311-91605087d5ad)
+
+
+## Features
+
+- Easy to integrate with any web application.
+- Lightweight and fast.

frontend/dist_widgets/manually_maintained_types.d.ts

@@ -1,11 +1,6 @@
-
-declare global {
-	interface OLSWidgets {
-		createEntityTree:(props:{
-			iri?:string,
-			ontologyId:string,
-			apiUrl:string
-		}, target:Element)=>void
-	}
-}
+export function createEntityTree(props:{
+	iri?:string,
+	ontologyId:string,
+	apiUrl:string
+}, target:Element);
 

frontend/dist_widgets/package.json

@@ -1,6 +1,7 @@
 {
-  "name": "ols4-widgets",
-  "version": "1.0.0",
-  "main": "ols4_widgets.min.js",
+  "name": "@ebi-ols/ols4-widgets",
+  "version": "1.0.2",
+  "type": "module",
+  "main": "ols4_widgets.js",
   "types": "manually_maintained_types.d.ts"
 }

frontend/src/widgets/index.ts

@@ -1,8 +1,8 @@
 
 import { createEntityTree } from "./EntityTreeWidget"
 
-window['OLSWidgets'] = {
-    createEntityTree
-}
+// window['OLSWidgets'] = {
+//     createEntityTree
+// }
 
 export { createEntityTree }