update impc_x_gwas config to use default identifiers properties

EBISPOT · Nov 8, 2024 · e3de936 · e3de936
1 parent 3df14f5
commit e3de936
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Showing 3 changed files with 19 additions and 12 deletions.
diff --git a/dataload/configs/pipeline_configs/ebi.json b/dataload/configs/pipeline_configs/ebi.json
@@ -1,8 +1,7 @@
 {
     "subgraphs": [
         "ebi_monarch_xspecies",
-        "impc",
-        "monarch",
+        "impc_x_gwas",
         "hra_kg"
     ]
 }
diff --git a/dataload/configs/subgraph_configs/impc_x_gwas.json b/dataload/configs/subgraph_configs/impc_x_gwas.json
@@ -4,11 +4,27 @@
   "bytes_per_merged_file": 1073741824,
   "identifier_props": [
     "id",
-    "monarch:iri",
+    "owl:equivalentClass",
+    "owl:equivalentProperty",
+    "owl:sameAs",
+    "grebi:hashId",
+    "grebi:equivalentTo",
     "ols:iri",
     "ols:shortForm",
+    "hgnc:ensembl_gene_id",
+    "obo:chebi/inchi",
+    "obo:chebi/inchikey",
+    "obo:chebi/smiles",
     "impc:pmId",
-    "impc:humanGeneAccId"
+    "impc:humanGeneAccId",
+    "monarch:iri",
+    "skos:exactMatch",
+    "ncit:P368",
+    "ncit:C98965",
+    "dcterms:identifier",
+    "oboinowl:hasAlternativeId",
+    "robokop:equivalent_identifiers",
+    "mesh.vocab:identifier"
   ],
   "type_superclasses": [
     "mondo:0000001",

diff --git a/dataload/configs/subgraph_configs/src/impc_x_gwas.py b/dataload/configs/subgraph_configs/src/impc_x_gwas.py
@@ -12,14 +12,6 @@
     "./configs/datasource_configs/monarch.yaml",
     "./configs/datasource_configs/sssom.yaml"
 ]
-config['identifier_props'] = [
-    "id",
-    "monarch:iri",
-    "ols:iri",
-    "ols:shortForm",
-    "impc:pmId",
-    "impc:humanGeneAccId"
-]
 
 if __name__ == '__main__':
     import json