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@DailyDreaming DailyDreaming released this 14 Nov 23:09
· 943 commits to master since this release
3.21.0
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Learn about vigilant mode.
  • Add kubernetes watch. #2848
  • Add service account configuration for Kubernetes. #2851
  • Head object 404 with encryption. #2853
  • Tests for Kubernetes. #2838
  • Turn usernames into non-spooky Kubernetes name components. #2836
  • Make examples a symlink to make examples discoverable. #2834
  • Kubernetes BatchSystem Support. #2786
  • Specify GCE coreos image by family name instead of specific version. #2829
  • Add toil-cwl-runner --provenance. #2785
  • Revise caching more. #2770
  • Bump psutil >= 3.0.1, <6. #2790
  • Add "failed_" prefix to failed logs. #2792
  • Add --writeLogsFromAllJobs option. #2781
  • Expose --default-container to toil-cwl-runner. #2784
  • Update cwltool from 1.0.20190228155703 -> 1.0.20190815141648. #2764
  • Pass jobID to Torque Wrapper. #2762
  • Limit Length of Log Names. #2755
  • Add CWL options --strict-memory-limit, --relax-path-checks, and --leave-container. #2718
  • Update EC2 nodes and script. #2709
  • Redesign File Job Store layout. #2669

Bug Fixes

  • Fix for passing default values between Workflows. #2831
  • Ignore checking versioning consistency when cleaning s3 jobstore. #2826
  • Ensure terminated ignored nodes are cleared from batch system. #2789
  • Fix Slurm sbatch command. #2777
  • Typo in gridengine.py. #2778
  • CWL fixes. #2783
  • Clarify /data mountpoint for dockerCall. #2747
  • Fix CWL tmpdir to be unique per job. #2745
  • Protect against potential AWS truncated downloads. #2731
  • Fix runningOnEC2 to work with all instances. #2734
  • Prevent Toil from zipping entire dirs. #2728
  • Changes to lsf.py to make it compatible on lsf9 and lsf10. #2726
  • Remove X86_64 type requirement from lsf support. #2723
  • Clean up temporary directories cwltoil uses to hold output streams. #2690

Thank you to our contributors: @mr-c, @arostamianfar, @adamnovak, @jeffrey856, @tthyer, @kaushik-work, @dleehr, @ionox0, @psafont, @mb1069, @tobiaszjarosiewicz, @gconcepcion, @byee4, @smoe, @TMiguelT, @jvivian-atreca!

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