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Refactoring to read more file types #73

Merged
merged 60 commits into from
Oct 23, 2024
Merged

Refactoring to read more file types #73

merged 60 commits into from
Oct 23, 2024

Commits on Oct 4, 2024

  1. separate read files

    @DanChaltiel
    DanChaltiel committed Oct 4, 2024
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  2. add dots to utils functions

    @DanChaltiel
    DanChaltiel committed Oct 4, 2024
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Commits on Oct 10, 2024

  1. improved add_class() 

    deal with duplicates
    @DanChaltiel
    DanChaltiel committed Oct 10, 2024
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  2. add simple snapshot test for read_trialmaster()

    @DanChaltiel
    DanChaltiel committed Oct 10, 2024
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  3. rewrite sas_formats application

    @DanChaltiel
    DanChaltiel committed Oct 10, 2024
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  4. fixed warning in lastnews_table 

    Incompatible methods ("Ops.Date", "Ops.POSIXt") for ">"
    @DanChaltiel
    DanChaltiel committed Oct 10, 2024
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  5. improve assert_file_exists 

    handle vectorized x
    @DanChaltiel
    DanChaltiel committed Oct 10, 2024
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  6. simplify read_all_xpt() 

    extract many internal functions that will help in other readers
    @DanChaltiel
    DanChaltiel committed Oct 10, 2024
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Commits on Oct 11, 2024

  1. separate warnings

    @DanChaltiel
    DanChaltiel committed Oct 11, 2024
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  2. use .update_lookup in read_tm

    @DanChaltiel
    DanChaltiel committed Oct 11, 2024
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Commits on Oct 18, 2024

  1. fixes for CHK

    @DanChaltiel
    DanChaltiel committed Oct 18, 2024
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  2. typo

    @DanChaltiel
    DanChaltiel committed Oct 18, 2024
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  3. add class to assertion errors

    @DanChaltiel
    DanChaltiel committed Oct 18, 2024
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  4. modularize read_trialmaster()

    @DanChaltiel
    DanChaltiel committed Oct 18, 2024
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  5. don't snapshot the database size

    @DanChaltiel
    DanChaltiel committed Oct 18, 2024
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Commits on Oct 19, 2024

  1. use rbind in edc_example() 

    bind_rows drop label attributes
    @DanChaltiel
    DanChaltiel committed Oct 19, 2024
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  2. bugfix get_label with POSIXlt 

    infinite loop!
    @DanChaltiel
    DanChaltiel committed Oct 19, 2024
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  3. Create read_all_csv.R

    @DanChaltiel
    DanChaltiel committed Oct 19, 2024
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  4. add tests for CSV

    @DanChaltiel
    DanChaltiel committed Oct 19, 2024
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Commits on Oct 20, 2024

  1. more tests for csv

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  2. Update trialmaster-simple.md

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  3. test_that read_all_csv() works with external labels

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  4. doc read_all_csv()

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  5. undo

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  6. add guess_read_function()

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  7. improve .read_all 

    add clean names and flatten error
    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  8. rewrite .flatten_error_columns()

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  9. .add_lookup_and_date

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  10. Update read_all_csv.R

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  11. minor tests update

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  12. fixed test-trialmaster.R

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  13. read_all_xpt rename directory to path

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  14. read_all_xpt datetime_extraction="guess"

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  15. format

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  16. Update dev version (Github Actions)

    @github-actions
    github-actions[bot] committed Oct 20, 2024
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  17. Update helper-init.R

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  18. Merge branch 'read_all' of https://github.com/DanChaltiel/EDCimport i… 

    …nto read_all
    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  19. Update bump_dev_version.yaml 

    [skip ci]
    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  20. improve .apply_label_lookup

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  21. add .read_format_lookup()

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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  22. allow reading read SAS formats from a lookup file

    @DanChaltiel
    DanChaltiel committed Oct 20, 2024
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Commits on Oct 22, 2024

  1. add control over labels in read_all_csv() 

    using options
    @DanChaltiel
    DanChaltiel committed Oct 22, 2024
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  2. rename options in read_all_xpt()

    @DanChaltiel
    DanChaltiel committed Oct 22, 2024
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  3. doc

    @DanChaltiel
    DanChaltiel committed Oct 22, 2024
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  4. dont snapshot the version

    @DanChaltiel
    DanChaltiel committed Oct 22, 2024
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  5. autoimport

    @DanChaltiel
    DanChaltiel committed Oct 22, 2024
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  6. fixed .flatten_error

    @DanChaltiel
    DanChaltiel committed Oct 22, 2024
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  7. fixed importfrom 

    crude calls should be prefixed
    @DanChaltiel
    DanChaltiel committed Oct 22, 2024
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  8. fixed tests

    @DanChaltiel
    DanChaltiel committed Oct 22, 2024
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  9. fixes for check

    @DanChaltiel
    DanChaltiel committed Oct 22, 2024
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Commits on Oct 23, 2024

  1. add read_all_sas()

    @DanChaltiel
    DanChaltiel committed Oct 23, 2024
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  2. apply .locate_file in read_all_xpt() too

    @DanChaltiel
    DanChaltiel committed Oct 23, 2024
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  3. minor formatting

    @DanChaltiel
    DanChaltiel committed Oct 23, 2024
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  4. doc

    @DanChaltiel
    DanChaltiel committed Oct 23, 2024
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  5. Merge branch 'main' into read_all

    @DanChaltiel
    DanChaltiel authored Oct 23, 2024
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  6. clean for check

    @DanChaltiel
    DanChaltiel committed Oct 23, 2024
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  7. Merge branch 'read_all' of https://github.com/DanChaltiel/EDCimport i… 

    …nto read_all
    @DanChaltiel
    DanChaltiel committed Oct 23, 2024
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  8. clean for check

    @DanChaltiel
    DanChaltiel committed Oct 23, 2024
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  9. fix tests

    @DanChaltiel
    DanChaltiel committed Oct 23, 2024
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  10. Update _pkgdown.yml

    @DanChaltiel
    DanChaltiel committed Oct 23, 2024
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