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CWTSLeiden · Aug 19, 2023 · 022e8e0 · 022e8e0
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diff --git a/docs/allclasses-frame.html b/docs/allclasses-frame.html
@@ -3,7 +3,7 @@
 <html lang="en">
 <head>
 <!-- Generated by javadoc -->
-<title>All Classes (networkanalysis 1.2.0 API)</title>
+<title>All Classes (networkanalysis 1.3.0 API)</title>
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
 <script type="text/javascript" src="script.js"></script>
 </head>
@@ -16,15 +16,17 @@ <h1 class="bar">All&nbsp;Classes</h1>
 <li><a href="nl/cwts/networkanalysis/ClusteringAlgorithm.html" title="interface in nl.cwts.networkanalysis" target="classFrame"><span class="interfaceName">ClusteringAlgorithm</span></a></li>
 <li><a href="nl/cwts/networkanalysis/ComponentsAlgorithm.html" title="class in nl.cwts.networkanalysis" target="classFrame">ComponentsAlgorithm</a></li>
 <li><a href="nl/cwts/networkanalysis/CPMClusteringAlgorithm.html" title="class in nl.cwts.networkanalysis" target="classFrame">CPMClusteringAlgorithm</a></li>
-<li><a href="nl/cwts/util/DynamicDoubleArray.html" title="class in nl.cwts.util" target="classFrame">DynamicDoubleArray</a></li>
-<li><a href="nl/cwts/util/DynamicIntArray.html" title="class in nl.cwts.util" target="classFrame">DynamicIntArray</a></li>
 <li><a href="nl/cwts/networkanalysis/FastLocalMovingAlgorithm.html" title="class in nl.cwts.networkanalysis" target="classFrame">FastLocalMovingAlgorithm</a></li>
 <li><a href="nl/cwts/util/FastMath.html" title="class in nl.cwts.util" target="classFrame">FastMath</a></li>
 <li><a href="nl/cwts/networkanalysis/run/FileIO.html" title="class in nl.cwts.networkanalysis.run" target="classFrame">FileIO</a></li>
 <li><a href="nl/cwts/networkanalysis/GradientDescentVOSLayoutAlgorithm.html" title="class in nl.cwts.networkanalysis" target="classFrame">GradientDescentVOSLayoutAlgorithm</a></li>
 <li><a href="nl/cwts/networkanalysis/IncrementalClusteringAlgorithm.html" title="interface in nl.cwts.networkanalysis" target="classFrame"><span class="interfaceName">IncrementalClusteringAlgorithm</span></a></li>
 <li><a href="nl/cwts/networkanalysis/IncrementalCPMClusteringAlgorithm.html" title="class in nl.cwts.networkanalysis" target="classFrame">IncrementalCPMClusteringAlgorithm</a></li>
 <li><a href="nl/cwts/networkanalysis/IterativeCPMClusteringAlgorithm.html" title="class in nl.cwts.networkanalysis" target="classFrame">IterativeCPMClusteringAlgorithm</a></li>
+<li><a href="nl/cwts/util/LargeBooleanArray.html" title="class in nl.cwts.util" target="classFrame">LargeBooleanArray</a></li>
+<li><a href="nl/cwts/util/LargeDoubleArray.html" title="class in nl.cwts.util" target="classFrame">LargeDoubleArray</a></li>
+<li><a href="nl/cwts/util/LargeIntArray.html" title="class in nl.cwts.util" target="classFrame">LargeIntArray</a></li>
+<li><a href="nl/cwts/util/LargeLongArray.html" title="class in nl.cwts.util" target="classFrame">LargeLongArray</a></li>
 <li><a href="nl/cwts/networkanalysis/Layout.html" title="class in nl.cwts.networkanalysis" target="classFrame">Layout</a></li>
 <li><a href="nl/cwts/networkanalysis/LayoutAlgorithm.html" title="interface in nl.cwts.networkanalysis" target="classFrame"><span class="interfaceName">LayoutAlgorithm</span></a></li>
 <li><a href="nl/cwts/networkanalysis/LeidenAlgorithm.html" title="class in nl.cwts.networkanalysis" target="classFrame">LeidenAlgorithm</a></li>

diff --git a/docs/allclasses-noframe.html b/docs/allclasses-noframe.html
@@ -3,7 +3,7 @@
 <html lang="en">
 <head>
 <!-- Generated by javadoc -->
-<title>All Classes (networkanalysis 1.2.0 API)</title>
+<title>All Classes (networkanalysis 1.3.0 API)</title>
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
 <script type="text/javascript" src="script.js"></script>
 </head>
@@ -16,15 +16,17 @@ <h1 class="bar">All&nbsp;Classes</h1>
 <li><a href="nl/cwts/networkanalysis/ClusteringAlgorithm.html" title="interface in nl.cwts.networkanalysis"><span class="interfaceName">ClusteringAlgorithm</span></a></li>
 <li><a href="nl/cwts/networkanalysis/ComponentsAlgorithm.html" title="class in nl.cwts.networkanalysis">ComponentsAlgorithm</a></li>
 <li><a href="nl/cwts/networkanalysis/CPMClusteringAlgorithm.html" title="class in nl.cwts.networkanalysis">CPMClusteringAlgorithm</a></li>
-<li><a href="nl/cwts/util/DynamicDoubleArray.html" title="class in nl.cwts.util">DynamicDoubleArray</a></li>
-<li><a href="nl/cwts/util/DynamicIntArray.html" title="class in nl.cwts.util">DynamicIntArray</a></li>
 <li><a href="nl/cwts/networkanalysis/FastLocalMovingAlgorithm.html" title="class in nl.cwts.networkanalysis">FastLocalMovingAlgorithm</a></li>
 <li><a href="nl/cwts/util/FastMath.html" title="class in nl.cwts.util">FastMath</a></li>
 <li><a href="nl/cwts/networkanalysis/run/FileIO.html" title="class in nl.cwts.networkanalysis.run">FileIO</a></li>
 <li><a href="nl/cwts/networkanalysis/GradientDescentVOSLayoutAlgorithm.html" title="class in nl.cwts.networkanalysis">GradientDescentVOSLayoutAlgorithm</a></li>
 <li><a href="nl/cwts/networkanalysis/IncrementalClusteringAlgorithm.html" title="interface in nl.cwts.networkanalysis"><span class="interfaceName">IncrementalClusteringAlgorithm</span></a></li>
 <li><a href="nl/cwts/networkanalysis/IncrementalCPMClusteringAlgorithm.html" title="class in nl.cwts.networkanalysis">IncrementalCPMClusteringAlgorithm</a></li>
 <li><a href="nl/cwts/networkanalysis/IterativeCPMClusteringAlgorithm.html" title="class in nl.cwts.networkanalysis">IterativeCPMClusteringAlgorithm</a></li>
+<li><a href="nl/cwts/util/LargeBooleanArray.html" title="class in nl.cwts.util">LargeBooleanArray</a></li>
+<li><a href="nl/cwts/util/LargeDoubleArray.html" title="class in nl.cwts.util">LargeDoubleArray</a></li>
+<li><a href="nl/cwts/util/LargeIntArray.html" title="class in nl.cwts.util">LargeIntArray</a></li>
+<li><a href="nl/cwts/util/LargeLongArray.html" title="class in nl.cwts.util">LargeLongArray</a></li>
 <li><a href="nl/cwts/networkanalysis/Layout.html" title="class in nl.cwts.networkanalysis">Layout</a></li>
 <li><a href="nl/cwts/networkanalysis/LayoutAlgorithm.html" title="interface in nl.cwts.networkanalysis"><span class="interfaceName">LayoutAlgorithm</span></a></li>
 <li><a href="nl/cwts/networkanalysis/LeidenAlgorithm.html" title="class in nl.cwts.networkanalysis">LeidenAlgorithm</a></li>

diff --git a/docs/constant-values.html b/docs/constant-values.html
@@ -3,15 +3,15 @@
 <html lang="en">
 <head>
 <!-- Generated by javadoc -->
-<title>Constant Field Values (networkanalysis 1.2.0 API)</title>
+<title>Constant Field Values (networkanalysis 1.3.0 API)</title>
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
 <script type="text/javascript" src="script.js"></script>
 </head>
 <body>
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Constant Field Values (networkanalysis 1.2.0 API)";
+            parent.document.title="Constant Field Values (networkanalysis 1.3.0 API)";
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@@ -340,7 +340,7 @@ <h2 title="nl.cwts">nl.cwts.*</h2>
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 <td><code><a href="nl/cwts/networkanalysis/run/RunNetworkClustering.html#DESCRIPTION">DESCRIPTION</a></code></td>
-<td class="colLast"><code>"RunNetworkClustering version 1.2.0\nBy Vincent Traag, Ludo Waltman, and Nees Jan van Eck\nCentre for Science and Technology Studies (CWTS), Leiden University\n"</code></td>
+<td class="colLast"><code>"RunNetworkClustering version 1.3.0\nBy Vincent Traag, Ludo Waltman, and Nees Jan van Eck\nCentre for Science and Technology Studies (CWTS), Leiden University\n"</code></td>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><a name="nl.cwts.networkanalysis.run.RunNetworkClustering.FRACTIONALIZATION">
@@ -471,7 +471,7 @@ <h2 title="nl.cwts">nl.cwts.*</h2>
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 </a><code>public&nbsp;static&nbsp;final&nbsp;java.lang.String</code></td>
 <td><code><a href="nl/cwts/networkanalysis/run/RunNetworkLayout.html#DESCRIPTION">DESCRIPTION</a></code></td>
-<td class="colLast"><code>"RunNetworkLayout version 1.2.0\nBy Nees Jan van Eck and Ludo Waltman\nCentre for Science and Technology Studies (CWTS), Leiden University\n"</code></td>
+<td class="colLast"><code>"RunNetworkLayout version 1.3.0\nBy Nees Jan van Eck and Ludo Waltman\nCentre for Science and Technology Studies (CWTS), Leiden University\n"</code></td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><a name="nl.cwts.networkanalysis.run.RunNetworkLayout.EDGE_WEIGHT_INCREMENT_UNCONNECTED_NODES">
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+<caption><span>nl.cwts.util.<a href="nl/cwts/util/LargeBooleanArray.html" title="class in nl.cwts.util">LargeBooleanArray</a></span><span class="tabEnd">&nbsp;</span></caption>
 <tr>
 <th class="colFirst" scope="col">Modifier and Type</th>
 <th scope="col">Constant Field</th>
 <th class="colLast" scope="col">Value</th>
 </tr>
 <tbody>
 <tr class="altColor">
-<td class="colFirst"><a name="nl.cwts.util.DynamicDoubleArray.DEFAULT_INITIAL_CAPACITY">
+<td class="colFirst"><a name="nl.cwts.util.LargeBooleanArray.ARRAY_BIT_SIZE">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;byte</code></td>
+<td><code><a href="nl/cwts/util/LargeBooleanArray.html#ARRAY_BIT_SIZE">ARRAY_BIT_SIZE</a></code></td>
+<td class="colLast"><code>30</code></td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeBooleanArray.MAX_SIZE">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;long</code></td>
+<td><code><a href="nl/cwts/util/LargeBooleanArray.html#MAX_SIZE">MAX_SIZE</a></code></td>
+<td class="colLast"><code>2305843003844984832L</code></td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeBooleanArray.MAX_SIZE_ARRAY">
 <!--   -->
 </a><code>public&nbsp;static&nbsp;final&nbsp;int</code></td>
-<td><code><a href="nl/cwts/util/DynamicDoubleArray.html#DEFAULT_INITIAL_CAPACITY">DEFAULT_INITIAL_CAPACITY</a></code></td>
-<td class="colLast"><code>10</code></td>
+<td><code><a href="nl/cwts/util/LargeBooleanArray.html#MAX_SIZE_ARRAY">MAX_SIZE_ARRAY</a></code></td>
+<td class="colLast"><code>1073741824</code></td>
 </tr>
 <tr class="rowColor">
-<td class="colFirst"><a name="nl.cwts.util.DynamicDoubleArray.RELATIVE_CAPACITY_INCREASE">
+<td class="colFirst"><a name="nl.cwts.util.LargeBooleanArray.MINIMUM_INITIAL_CAPACITY">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;long</code></td>
+<td><code><a href="nl/cwts/util/LargeBooleanArray.html#MINIMUM_INITIAL_CAPACITY">MINIMUM_INITIAL_CAPACITY</a></code></td>
+<td class="colLast"><code>10L</code></td>
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+<tr class="altColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeBooleanArray.RELATIVE_CAPACITY_INCREASE">
 <!--   -->
 </a><code>public&nbsp;static&nbsp;final&nbsp;double</code></td>
-<td><code><a href="nl/cwts/util/DynamicDoubleArray.html#RELATIVE_CAPACITY_INCREASE">RELATIVE_CAPACITY_INCREASE</a></code></td>
+<td><code><a href="nl/cwts/util/LargeBooleanArray.html#RELATIVE_CAPACITY_INCREASE">RELATIVE_CAPACITY_INCREASE</a></code></td>
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+<caption><span>nl.cwts.util.<a href="nl/cwts/util/LargeDoubleArray.html" title="class in nl.cwts.util">LargeDoubleArray</a></span><span class="tabEnd">&nbsp;</span></caption>
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 <th class="colFirst" scope="col">Modifier and Type</th>
 <th scope="col">Constant Field</th>
 <th class="colLast" scope="col">Value</th>
 </tr>
 <tbody>
 <tr class="altColor">
-<td class="colFirst"><a name="nl.cwts.util.DynamicIntArray.DEFAULT_INITIAL_CAPACITY">
+<td class="colFirst"><a name="nl.cwts.util.LargeDoubleArray.ARRAY_BIT_SIZE">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;byte</code></td>
+<td><code><a href="nl/cwts/util/LargeDoubleArray.html#ARRAY_BIT_SIZE">ARRAY_BIT_SIZE</a></code></td>
+<td class="colLast"><code>30</code></td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeDoubleArray.MAX_SIZE">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;long</code></td>
+<td><code><a href="nl/cwts/util/LargeDoubleArray.html#MAX_SIZE">MAX_SIZE</a></code></td>
+<td class="colLast"><code>2305843003844984832L</code></td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeDoubleArray.MAX_SIZE_ARRAY">
 <!--   -->
 </a><code>public&nbsp;static&nbsp;final&nbsp;int</code></td>
-<td><code><a href="nl/cwts/util/DynamicIntArray.html#DEFAULT_INITIAL_CAPACITY">DEFAULT_INITIAL_CAPACITY</a></code></td>
-<td class="colLast"><code>10</code></td>
+<td><code><a href="nl/cwts/util/LargeDoubleArray.html#MAX_SIZE_ARRAY">MAX_SIZE_ARRAY</a></code></td>
+<td class="colLast"><code>1073741824</code></td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeDoubleArray.MINIMUM_INITIAL_CAPACITY">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;long</code></td>
+<td><code><a href="nl/cwts/util/LargeDoubleArray.html#MINIMUM_INITIAL_CAPACITY">MINIMUM_INITIAL_CAPACITY</a></code></td>
+<td class="colLast"><code>10L</code></td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeDoubleArray.RELATIVE_CAPACITY_INCREASE">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;double</code></td>
+<td><code><a href="nl/cwts/util/LargeDoubleArray.html#RELATIVE_CAPACITY_INCREASE">RELATIVE_CAPACITY_INCREASE</a></code></td>
+<td class="colLast"><code>0.5</code></td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList">
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+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th scope="col">Constant Field</th>
+<th class="colLast" scope="col">Value</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeIntArray.ARRAY_BIT_SIZE">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;byte</code></td>
+<td><code><a href="nl/cwts/util/LargeIntArray.html#ARRAY_BIT_SIZE">ARRAY_BIT_SIZE</a></code></td>
+<td class="colLast"><code>30</code></td>
 </tr>
 <tr class="rowColor">
-<td class="colFirst"><a name="nl.cwts.util.DynamicIntArray.RELATIVE_CAPACITY_INCREASE">
+<td class="colFirst"><a name="nl.cwts.util.LargeIntArray.MAX_SIZE">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;long</code></td>
+<td><code><a href="nl/cwts/util/LargeIntArray.html#MAX_SIZE">MAX_SIZE</a></code></td>
+<td class="colLast"><code>2305843003844984832L</code></td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeIntArray.MAX_SIZE_ARRAY">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;int</code></td>
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+<td class="colLast"><code>1073741824</code></td>
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+<tr class="rowColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeIntArray.MINIMUM_INITIAL_CAPACITY">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;long</code></td>
+<td><code><a href="nl/cwts/util/LargeIntArray.html#MINIMUM_INITIAL_CAPACITY">MINIMUM_INITIAL_CAPACITY</a></code></td>
+<td class="colLast"><code>10L</code></td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeIntArray.RELATIVE_CAPACITY_INCREASE">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;double</code></td>
+<td><code><a href="nl/cwts/util/LargeIntArray.html#RELATIVE_CAPACITY_INCREASE">RELATIVE_CAPACITY_INCREASE</a></code></td>
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+<caption><span>nl.cwts.util.<a href="nl/cwts/util/LargeLongArray.html" title="class in nl.cwts.util">LargeLongArray</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th scope="col">Constant Field</th>
+<th class="colLast" scope="col">Value</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeLongArray.ARRAY_BIT_SIZE">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;byte</code></td>
+<td><code><a href="nl/cwts/util/LargeLongArray.html#ARRAY_BIT_SIZE">ARRAY_BIT_SIZE</a></code></td>
+<td class="colLast"><code>30</code></td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeLongArray.MAX_SIZE">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;long</code></td>
+<td><code><a href="nl/cwts/util/LargeLongArray.html#MAX_SIZE">MAX_SIZE</a></code></td>
+<td class="colLast"><code>2305843003844984832L</code></td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeLongArray.MAX_SIZE_ARRAY">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;int</code></td>
+<td><code><a href="nl/cwts/util/LargeLongArray.html#MAX_SIZE_ARRAY">MAX_SIZE_ARRAY</a></code></td>
+<td class="colLast"><code>1073741824</code></td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeLongArray.MINIMUM_INITIAL_CAPACITY">
+<!--   -->
+</a><code>public&nbsp;static&nbsp;final&nbsp;long</code></td>
+<td><code><a href="nl/cwts/util/LargeLongArray.html#MINIMUM_INITIAL_CAPACITY">MINIMUM_INITIAL_CAPACITY</a></code></td>
+<td class="colLast"><code>10L</code></td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a name="nl.cwts.util.LargeLongArray.RELATIVE_CAPACITY_INCREASE">
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 </a><code>public&nbsp;static&nbsp;final&nbsp;double</code></td>
-<td><code><a href="nl/cwts/util/DynamicIntArray.html#RELATIVE_CAPACITY_INCREASE">RELATIVE_CAPACITY_INCREASE</a></code></td>
+<td><code><a href="nl/cwts/util/LargeLongArray.html#RELATIVE_CAPACITY_INCREASE">RELATIVE_CAPACITY_INCREASE</a></code></td>
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diff --git a/docs/deprecated-list.html b/docs/deprecated-list.html
@@ -3,15 +3,15 @@
 <html lang="en">
 <head>
 <!-- Generated by javadoc -->
-<title>Deprecated List (networkanalysis 1.2.0 API)</title>
+<title>Deprecated List (networkanalysis 1.3.0 API)</title>
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
 <script type="text/javascript" src="script.js"></script>
 </head>
 <body>
 <script type="text/javascript"><!--
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-            parent.document.title="Deprecated List (networkanalysis 1.2.0 API)";
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diff --git a/docs/help-doc.html b/docs/help-doc.html
@@ -3,15 +3,15 @@
 <html lang="en">
 <head>
 <!-- Generated by javadoc -->
-<title>API Help (networkanalysis 1.2.0 API)</title>
+<title>API Help (networkanalysis 1.3.0 API)</title>
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
 <script type="text/javascript" src="script.js"></script>
 </head>
 <body>
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="API Help (networkanalysis 1.2.0 API)";
+            parent.document.title="API Help (networkanalysis 1.3.0 API)";
         }
     }
     catch(err) {