Foqus cloud #1241
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Foqus cloud #1241
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…3.03.09 Boverhof.user plugins backend.2023.03.09
* adding attribute check to avoid throwing exception * fixed code formatting
* Try adding isinstance check * Fix import name
* Changes to allow install for arm64 darwin. * Changes to allow install for arm64 darwin. * fixed logic for conditional install of pyQt5
* update rank function to use pure python library and move away from mlrose-hiive * tweak the way we pass permutation argument * pinning python-tsp version * tweaking ranked_df in the test_rank function. The new ordering algorithm always start in the node zero and goes reversed to what the mlrose TSP used to do. * update documentation to reflect change in the library used for ordering designs
* Update text in Example USF-1 * Update text in Example USF-2 * Update text in Example USF-3 * Add updated figures for Example USF-1 * Add updated figures for Example USF-3 * Update figures in Example USF-1 * Update figures and captions for Example USF-3 * Update text in Example NUSF-1 * Add new screenshots to Example NUSF-1 * Add example file for Example NUSF-1 * Update figures and captions in Example NUSF-1 * Update text in Example IRSF-1 * Add new screenshots for Example IRSF-1 * Update figures in Example IRSF-1
…t#1164) * Brady's gradient generation script * Adding helpful docstrings and comments * Brady's working files for gradient model regression * Integrate Brady's regression script into main file, clean up * fix formatting for black and pylint * Generalize for multiple outputs, add settings optimization loop * Add documentation for gradient tool * Manually run spellchecker on ML AI Plugin files * Fix links and file names * Add option to use simple partial derivative in lieu of chain rule formula * Fix comment * run black again * minor typo * Give docs page reference name --------- Co-authored-by: Keith Beattie <[email protected]>
…CCSI-Toolset#1169) * Example training script, model file * Framework to support SMT models * Update documentation * Update tests, rename test model * correct text * run black * run typos manually on doc file * review comment --------- Co-authored-by: Ludovico Bianchi <[email protected]>
* Add NLOpt installation instructions back * Fix code block syntax --------- Co-authored-by: Ludovico Bianchi <[email protected]>
* first attempt at spellchecker, listing all file types and excluding some known exceptions * Move file to repo root * Exclude JSON and R files as we are less sure if they can be corrected * Add common abbreviations to avoid false positives * Fix "releative" * Fix "permision" * Fix "Setings" * Fix "untill" * Fix "buttom" * Fix "alloted" * Fix "controling" * Fix "auxiliary" * Fix "constriant" * Fix most typos in non-code files * Change config file path in GHA workflow * Fix "seperate" * Fix "excpetion" * Fix "handeling" * Fix "deafult(s)" * Fix typos in code comments or strings * Add exclusions for typos for identifiers in non-internal scopes * Fix typos in code * Fix typo in figure name * Fix "thershold" * Format code * Fix "NoInteractiveSer" * Fix "ghostOuput" * Uncommit and ignore Pipfile --------- Co-authored-by: Ludovico Bianchi <[email protected]> Co-authored-by: Keith Beattie <[email protected]>
…pport for Python 3.7 (CCSI-Toolset#1173) * Add push trigger while WIP * Add Python 3.9 to compare * Remove PR jobs while WIP * Add pull_request trigger while WIP * Try removing version constraint for Pywin32 * Modify job to run from PR branch * Add back stable matrix item to avoid failures * Add back pywin32 version constraint to verify correlation to failures * Revert "Add back pywin32 version constraint to verify correlation to failures" This reverts commit c78e3ae. * Revert "Remove PR jobs while WIP" This reverts commit e3e428d. * Add exact version constraint for pywin32 * Add pywin32 version to conda install commands in docs and CI * Remove Python 3.7 from installation docs and CI matrices * Revert temporary changes to nightlies CI workflow
* fix FixedFormatter issue when plotting with matplotlib * embedding all SDoE plots into QDialog windows * fixing test_plot_utils.py * fixing test_plot_utils.py * fixing test_plot_utils.py * showing the 2 NUSF plots in the same QDialog window * adding QDialog window titles * fix previous commit * fixing sdoe gui test * importing Window class from sdoePreview * adding tests for plot_weights and plot_pareto functions * copy_from_package nusf and irsf candidate files * adding NUSF and IRSF results in JSON files to test plotting functions * adding more SDoE GUI testing to cover sdoePreview dialog
* Add MVP for ML/AI surrogate plugin * Add copy of data file for testing * Formatting changes * Resolve pylint error * Initial implementation of GUI tests for surrogate plugins * Skip tests if tensorflow not available * Add utility method to export input and output vars directly as dataframe * Add utility method to get currently selected input and output vars data * Add example code for accessing selected input and output vars and data * Format * Remove f-string syntax incompatible with Python 3.7 * Updated to use variables from flowsheet * Remove unused and/or redundant local variables for training data * Intercept stdout so that training output can be shown in GUI * Change model serialization file format to resolve deprecation warning * Use flowsheet for pytorch_nn.py and scikit_nn.py * Formatting * Displays pytorch_nn.py output in FOQUS GUI * Handle pylint error * Generalize importorskip using parametrization * Use different session file for NN training * Add variable selection before executing * Format code * Draft description for pytorch_nn.py and scikit_nn.py Also fixed spacing in keras_nn.py description * Added input validation and custom file name option * Add ml_ai subdirectory to default path for output file * Fix typos identified by Spell Checker --------- Co-authored-by: Ludovico Bianchi <[email protected]> Co-authored-by: Keith Beattie <[email protected]> Co-authored-by: Brandon Paul <[email protected]> Co-authored-by: Brandon Paul <[email protected]>
* Initial documentation for keras_nn plugin * Fix doc issues * Make docs generic to include pytorch and sci-kit learn * Add note mentioning planned updates --------- Co-authored-by: Ludovico Bianchi <[email protected]>
* Found a few more files that needed the copyright year updated * Adding usage to .addheader.yml and running it again
* restricting matplotlib due to issues when using 3.8 * cast parameter for setValue to int * Add link to CCSI-Toolset#1211 --------- Co-authored-by: Ludovico Bianchi <[email protected]>
* Add arange as known exception * Update mainWindow.py * Update graph.py * Update ALAMO.py * Update surrogate.py * Update irsf.py probably initials, add periods so it's not flagged * Add yhat, iy as known variable names to except * Update session.py
* update smt genn to new syntax, create example of jenn and retrain models * update code, tests and dependency list * update documentation * run black * Update copyright year in new file
* fix pandas deprecation for UQ * fix pandas deprecation for SDoE and ODoE * casting "time" column in UQ result as str instead of datetime * casting column dtypes in the dataframe initialization
* Define logger variable once * Add verification for PSUADE executable and exit with error if not found
* reorganize ML_AI example files and regenerate models with latest H5-compatible TensorFlow * update tests to verify new file structure is working * first attempt at updating examples, methods, tests to support Keras 3 * pickup copied zip file * run black * unfix TensorFlow to use latest Keras * add example of mea column model with no custom layer * add handling for no custom layer and for TFSM models * run black * update documentation * test running ML AI tests on Python 3.9 and 3.11 * add prints to help debugging * more print statements and items for debugging * run black, again * revert debugging changes, remove file size condition * Update checks.yml * Temporarily set pytest to exit after 3 failures to debug macOS timeouts * Remove job dependencies to work around repeated spell-check errors * Try increasing timeout causing test failures on macOS * Try requiring different TF version for macOS * Avoid installing TF at all on macOS * Update expected exception for TF import --------- Co-authored-by: Ludovico Bianchi <[email protected]>
* Use dedicated dependent job for Codecov upload * Empty commit to trigger CI * Fix indentation
* Tweaking test_plot_utils and test_sdoe. Adding test_df_utils * clean up imports --------- Co-authored-by: Keith Beattie <[email protected]> Co-authored-by: Ludovico Bianchi <[email protected]>
* Update settings.rst * Update install_optional.rst * Update alamo.rst
* TestNUSF in progress For issue CCSI-Toolset#1218 * Working NUSF Dropdown Selection * Formatting * Implement Run SDoE in Test * Add Test for NUSF Plotting * Check Generated Design rows instead of run button * Working test for NUSF-2 Tutorial * Placing NUSF and NUSF2 tests together causes other error * NUSF and NUSF2 now in separate files The two tests succeed when run individually, but not when all tests are run together * Change window fixture scope to "module" * Run black . * Revert conftest.py change * Move NUSF tests to test_sdoe.py * Try uploading coverage report even if pytest step fails --------- Co-authored-by: Pedro Sotorrio <[email protected]> Co-authored-by: Ludovico Bianchi <[email protected]>
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