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Fix hpcng/singularity#5144 and apt-get issues. #8

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Fix hpcng/singularity#5144 and apt-get issues. #8

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10 changes: 6 additions & 4 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -14,13 +14,15 @@ ENV GALAXY_CONFIG_TOOL_CONFIG_FILE=config/tool_conf.xml.sample,config/shed_tool_
ENV GALAXY_DOCKER_ENABLED=True

## Install environment modules & singularity
RUN apt-get update --fix-missing \
RUN curl -sS https://dl.yarnpkg.com/debian/pubkey.gpg | apt-key add - \
&& mv /etc/apt/sources.list.d/htcondor.list* /tmp \
&& apt-get update \
&& apt-get install -y wget libssl-dev libssl1.0.0 \
&& sudo apt-get update \
&& apt-get update \
&& apt-get install -y environment-modules squashfs-tools libtool libarchive-dev \
&& git clone https://github.com/singularityware/singularity.git \
&& mv /tmp/htcondor.list* /etc/apt/sources.list.d/ \
&& git clone https://github.com/lyklev/singularity \
&& cd singularity \
&& git checkout 2.6.0 \
&& ./autogen.sh \
&& ./configure --prefix=/usr/local \
&& make \
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