BundleWarp, streamline-based nonlinear registration of white matter tracts

Bramsh Qamar Chandio, Emanuele Olivetti, David Romero, Jaroslaw Harezlak, and Eleftherios Garyfallidis

This repository contains BundleWarp code and tutorial on example data.

Dependencies:

Python 3

DIPY (https://dipy.org/)

FURY (https://fury.gl/)

SciPy - (SciPy => 1.9.0) (https://scipy.org/)

pycpd (https://pypi.org/project/pycpd/)

Reference:

Chandio, B.Q., Olivetti, E., Romero, D., Harezlak, J. and Garyfallidis, E., 2023. BundleWarp, streamline-based nonlinear registration of white matter tracts. bioRxiv.

https://www.biorxiv.org/content/10.1101/2023.01.04.522802v1.abstract

Chandio, B.Q., 2022. Advancing White Matter Tractometry of the Brain Using Diffusion MRI and Machine Learning (Doctoral dissertation, Indiana University).

https://www.proquest.com/openview/000c166f4fb7b6f630c878880c773dfb/1?pq-origsite=gscholar&cbl=18750&diss=y