This repository has been archived by the owner on Feb 11, 2023. It is now read-only.
ANHIR update
General update related to Automatic Non-rigid Histological Image Registration (ANHIR) challenge participation, handling incomplete datasets and generating rich registration statistic. A notebook with visual comparisons of ANHIR 2019 participants is included.
Main changes:
- fix export images/landmarks
- relativize expteriment paths
- reformat expt. run & returns
- add affine & elastic transform statistic
- include weighted TRE
- redefine (TRE) robustness
- add hist. matching & SIFT for bUnwarpJ
- add RNiftyReg & ANTsPy method
- use YAML configs