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@ncborcherding ncborcherding released this 04 May 10:15
· 208 commits to master since this release
v2.0.3
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Learn about vigilant mode.

scRepertoire VERSION 2.0.3

UNDERLYING CHANGES

  • Modified support for Omniscope format to allow for dual chains
  • Added ParseBio support int loadContigs() and testthat
  • Added support for productive variable to loadContigs() for BD, Omniscope, and Immcantation formats
  • Replace numerical indexing with name indexing for loadContigs()
  • combineBCR() and combineTCR() no allow for unproductive contig inclusions with new filterNonproductive parameter.
  • combineBCR() will now prompt user if samples is not included instead of erroring.
  • Added base threshold by length for internal .lvCompare()
  • Ensured internal .lvcompare() only looks at first set of sequences in multi-sequence chain.
  • Fixed bug in exporting graph for clonaCluster()
  • Fixed conflict in functions between igraph and dplyr packages
  • clonalOccupy() rewrite counting and NA handling (v2.0.2)
  • clonalOverlay() arguments now cutpoint and use cut.category to select either clonalProportion or clonalFrequency v(2.0.1)
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