v11.2: better fit of GC-content bias in contaminated samples

BoevaLab · Jan 23, 2018 · ec1917d · ec1917d
1 parent 5b1748b
commit ec1917d
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Showing 3 changed files with 2 additions and 2 deletions.
diff --git a/src/freec b/src/freec
diff --git a/src/myFunc.cpp b/src/myFunc.cpp
@@ -1497,7 +1497,7 @@ std::string stringFromBool (bool value) {
 }
 
 float runEM (const vector<float>& x,const vector<float>& y,double * a, int degree, int & NumberOfIterations,int ploidy, int maximalNumberOfCopies, bool intercept, float contamination) {
-
+    if (contamination==0) contamination=0.3; //starting from v11.2 - to improve the fit
 	float rmserror = -1;
 
 	if (x.size() != y.size()) {

diff --git a/src/version.h b/src/version.h
@@ -3,7 +3,7 @@
 #define VERSION_H
 
 const double VERSION_OFFSET = 3;
-const double FREEC_VERSION = 11.1;
+const double FREEC_VERSION = 11.2;
 const double CONTROL_FREEC_VERSION = FREEC_VERSION - VERSION_OFFSET;
 
 #endif