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Build first 3.21 container #166

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Build first 3.21 container

Build first 3.21 container #166

Triggered via push November 5, 2024 02:14
@almahmoudalmahmoud
pushed 2f770e4
devel
Status Failure
Total duration 1h 31m 7s
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build_containers.yaml

on: push
Matrix: Build branch images
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4 errors and 5 warnings
Build branch images (rocker/tidyverse, 4.4.1, N/A, tidyverse)
buildx failed with: ERROR: failed to solve: process "/bin/sh -c bash /tmp/install_bioc_sysdeps.sh $BIOCONDUCTOR_VERSION && echo \"R_LIBS=/usr/local/lib/R/host-site-library:\\${R_LIBS}\" > /usr/local/lib/R/etc/Renviron.site && curl -OL http://bioconductor.org/checkResults/devel/bioc-LATEST/Renviron.bioc && sed -i '/^IS_BIOC_BUILD_MACHINE/d' Renviron.bioc && cat Renviron.bioc | grep -o '^[^#]*' | sed 's/export //g' >>/etc/environment && cat Renviron.bioc >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_VERSION=${BIOCONDUCTOR_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_DOCKER_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_CFLAGS=\"-I/usr/include\"' >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_LIBS=\"-lsbml\"' >> /usr/local/lib/R/etc/Renviron.site && rm -rf Renviron.bioc && sed -i 's/-Werror=format-security/-Wformat-security/g' /usr/local/lib/R/etc/Makeconf" did not complete successfully: exit code: 2
Build branch images (rocker/shiny, 4.4.1, N/A, shiny)
buildx failed with: ERROR: failed to solve: process "/bin/sh -c bash /tmp/install_bioc_sysdeps.sh $BIOCONDUCTOR_VERSION && echo \"R_LIBS=/usr/local/lib/R/host-site-library:\\${R_LIBS}\" > /usr/local/lib/R/etc/Renviron.site && curl -OL http://bioconductor.org/checkResults/devel/bioc-LATEST/Renviron.bioc && sed -i '/^IS_BIOC_BUILD_MACHINE/d' Renviron.bioc && cat Renviron.bioc | grep -o '^[^#]*' | sed 's/export //g' >>/etc/environment && cat Renviron.bioc >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_VERSION=${BIOCONDUCTOR_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_DOCKER_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_CFLAGS=\"-I/usr/include\"' >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_LIBS=\"-lsbml\"' >> /usr/local/lib/R/etc/Renviron.site && rm -rf Renviron.bioc && sed -i 's/-Werror=format-security/-Wformat-security/g' /usr/local/lib/R/etc/Makeconf" did not complete successfully: exit code: 2
Build branch images (rocker/ml-verse, 4.4.1, N/A, ml-verse)
buildx failed with: ERROR: failed to solve: process "/bin/sh -c bash /tmp/install_bioc_sysdeps.sh $BIOCONDUCTOR_VERSION && echo \"R_LIBS=/usr/local/lib/R/host-site-library:\\${R_LIBS}\" > /usr/local/lib/R/etc/Renviron.site && curl -OL http://bioconductor.org/checkResults/devel/bioc-LATEST/Renviron.bioc && sed -i '/^IS_BIOC_BUILD_MACHINE/d' Renviron.bioc && cat Renviron.bioc | grep -o '^[^#]*' | sed 's/export //g' >>/etc/environment && cat Renviron.bioc >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_VERSION=${BIOCONDUCTOR_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_DOCKER_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_CFLAGS=\"-I/usr/include\"' >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_LIBS=\"-lsbml\"' >> /usr/local/lib/R/etc/Renviron.site && rm -rf Renviron.bioc && sed -i 's/-Werror=format-security/-Wformat-security/g' /usr/local/lib/R/etc/Makeconf" did not complete successfully: exit code: 1
Build branch images (ghcr.io/bioconductor/rocker-rstudio, devel-amd64, devel-arm64, bioconductor_...
buildx failed with: ERROR: failed to solve: process "/bin/sh -c bash /tmp/install_bioc_sysdeps.sh $BIOCONDUCTOR_VERSION && echo \"R_LIBS=/usr/local/lib/R/host-site-library:\\${R_LIBS}\" > /usr/local/lib/R/etc/Renviron.site && curl -OL http://bioconductor.org/checkResults/devel/bioc-LATEST/Renviron.bioc && sed -i '/^IS_BIOC_BUILD_MACHINE/d' Renviron.bioc && cat Renviron.bioc | grep -o '^[^#]*' | sed 's/export //g' >>/etc/environment && cat Renviron.bioc >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_VERSION=${BIOCONDUCTOR_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_DOCKER_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_CFLAGS=\"-I/usr/include\"' >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_LIBS=\"-lsbml\"' >> /usr/local/lib/R/etc/Renviron.site && rm -rf Renviron.bioc && sed -i 's/-Werror=format-security/-Wformat-security/g' /usr/local/lib/R/etc/Makeconf" did not complete successfully: exit code: 2
Build branch images (rocker/tidyverse, 4.4.1, N/A, tidyverse)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/metadata-action@v4, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Build branch images (rocker/shiny, 4.4.1, N/A, shiny)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/metadata-action@v4, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Build branch images (rocker/ml-verse, 4.4.1, N/A, ml-verse)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/metadata-action@v4, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Build branch images (ghcr.io/bioconductor/rocker-rstudio, devel-amd64, devel-arm64, bioconductor_...
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/metadata-action@v4, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Build branch images (ghcr.io/bioconductor/rocker-r-ver, devel-amd64, devel-arm64, r-ver)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/metadata-action@v4, docker/build-push-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/