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Releases: BioOmics/iSeq

v1.2.0

23 Oct 03:19
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  • New -s, --speed option to set the download speed limit (MB/s) (default: 1000 MB/s). Such as iseq -i SRR7706354 -s 10
  • Dependency update for sra-tools: The version requirement for sra-tools has been updated from sra-tools=2.11 to sra-tools>=2.11.0.

v1.1.0

18 Sep 06:51
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  • New -e option for merging FASTQ files:
    Added a -e option to merge multiple FASTQ files into a single file for each Experiment (-e ex), Sample (-e sa), or Study (-e st).

  • New -i option for input:
    iSeq can now accept a file containing multiple accession numbers as input by -i fileName.

  • API change for GSA metadata download:
    The API endpoint has been updated from getRunInfo to getRunInfoByCra for downloading GSA metadata.

More Updates
  • Save result to personal directory:
    The output results will now be saved in the user's personal directory by -o option.

  • Updated regex for SAMC matching:
    The matching pattern for SAMC has been changed from SAMC[A-Z]?[0-9]+ to SAMC[0-9]+.

  • Fix some bugs

iSeq first release

06 May 08:07
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Today is a day of celebration as we proudly announce the first release of iSeq on GitHub!

This isn't merely a software launch; it's the commencement of a collaborative journey where we extend an invitation to developers, researchers, and sequencing enthusiasts worldwide to partner with us in advancing the frontiers of sequencing data retrieval.