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julenaduriz committed Dec 11, 2024
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2 changes: 1 addition & 1 deletion index.html
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Expand Up @@ -164,5 +164,5 @@ <h3 id="running-simulations-with-plumed-at-dipc"><a href="dipc/">Running simulat

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5 changes: 2 additions & 3 deletions metadynamics/metadynamics-with-Q/index.html
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<h2 id="defining-native-contacts-q-as-collective-variable">Defining native contacts (Q) as collective variable</h2>
<p>In order to understand how to implement Q as a collective variable in PLUMED
one needs to understand how Q is defined:</p>
<pre><code>$Q(X) = \frac{1}{N}
\sum_{\left(i,i\ritgh)\frac{1}{1+exp\left[\beta \left(r_{ij}(X)-\lambda r^{0}_{ij}\right)]}}$
</code></pre>
<p>$$Q(X) = \frac{1}{N}
\sum_{\left(i,i\ritgh)\frac{1}{1+exp\left[\beta \left(r_{ij}(X)-\lambda r^{0}_{ij}\right)]}}$$</p>

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