Fix deprecation warning in boundary.py (#2)

* Fix DeprecationWarning in boundary.py * Fix workflow trigger * Increment version
BMCV · Feb 22, 2024 · 03e2ecf · 03e2ecf
1 parent 8715433
commit 03e2ecf
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/.github/workflows/testsuite.yml b/.github/workflows/testsuite.yml
@@ -11,7 +11,7 @@ on:
 
     paths:
       - .github/workflows/testsuite.yml
-      - segmetrics
+      - segmetrics/*.py
       - setup.py
       - tests/*.py
       - tests/*.csv

diff --git a/segmetrics/__init__.py b/segmetrics/__init__.py
@@ -8,7 +8,7 @@
 
 VERSION_MAJOR = 1
 VERSION_MINOR = 4
-VERSION_PATCH = 0
+VERSION_PATCH = 1
 
 VERSION = '%d.%d%s' % (VERSION_MAJOR, VERSION_MINOR, '.%d' % VERSION_PATCH if VERSION_PATCH > 0 else '')
 
diff --git a/segmetrics/boundary.py b/segmetrics/boundary.py
@@ -16,7 +16,7 @@ def _compute_binary_boundary(mask, width=1):
 
 def _compute_boundary_distance_map(mask):
     boundary = _compute_binary_boundary(mask)
-    return ndimage.morphology.distance_transform_edt(np.logical_not(boundary))
+    return ndimage.distance_transform_edt(np.logical_not(boundary))
 
 
 def _quantile_max(quantile, values):
@@ -72,15 +72,15 @@ def __init__(self, mode='sym', quantile=1, **kwargs):
 
     def set_expected(self, expected):
         self.expected_boundary = _compute_binary_boundary(expected > 0)
-        self.expected_boundary_distance_map = ndimage.morphology.distance_transform_edt(np.logical_not(self.expected_boundary))
+        self.expected_boundary_distance_map = ndimage.distance_transform_edt(np.logical_not(self.expected_boundary))
 
     def compute(self, actual):
         actual_boundary = _compute_binary_boundary(actual > 0)
         if not self.expected_boundary.any() or not actual_boundary.any(): return []
         results = []
         if self.mode in ('a2e', 'sym'): results.append(self._quantile_max(self.expected_boundary_distance_map[actual_boundary]))
         if self.mode in ('e2a', 'sym'):
-            actual_boundary_distance_map = ndimage.morphology.distance_transform_edt(np.logical_not(actual_boundary))
+            actual_boundary_distance_map = ndimage.distance_transform_edt(np.logical_not(actual_boundary))
             results.append(self._quantile_max(actual_boundary_distance_map[self.expected_boundary]))
         return [max(results)]
 
@@ -107,7 +107,7 @@ class NSD(DistanceMeasure):
     def set_expected(self, expected):
         self.expected = (expected > 0)
         self.expected_boundary = _compute_binary_boundary(self.expected)
-        self.expected_boundary_distance_map = ndimage.morphology.distance_transform_edt(np.logical_not(self.expected_boundary))
+        self.expected_boundary_distance_map = ndimage.distance_transform_edt(np.logical_not(self.expected_boundary))
 
     def compute(self, actual):
         actual = (actual > 0)