Merge pull request #17 from BMCV/dev/update-ci #83

	name: Test suite

	on:
	workflow_dispatch:
	pull_request:
	branches:
	- develop
	- master
	paths:
	- .github/workflows/testsuite.yml
	- segmetrics/*.py
	- setup.py
	- tests/*.py
	- tests/*.csv
	- requirements.txt
	push:
	branches:
	- master

	jobs:
	python_lint:
	name: Linting
	runs-on: ubuntu-latest
	steps:

	- name: Checkout
	uses: actions/checkout@v4

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install flake8 isort

	- name: Run flake8
	shell: bash
	run: \|
	flake8 segmetrics
	flake8 tests

	- name: Run isort
	shell: bash
	run: \|
	isort segmetrics --check-only
	isort tests --check-only

	type_checking:
	name: Type checking
	runs-on: ubuntu-latest
	steps:

	- name: Checkout
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install mypy

	- name: Run mypy
	shell: bash
	run: \|
	mypy --config-file .mypy.ini --ignore-missing-imports segmetrics

	run_testsuite:
	uses: BMCV/github-workflows/.github/workflows/coverage-run.yml@main
	name: Tests
	with:
	apt_install: libopenblas-dev
	main_branch: master
	python_versions: '["3.9", "3.10", "3.11", "3.12"]'
	main_python_version: "3.9"
	gist-id: f46ddefff0798639bc320b13331dc7ca
	gist-filename: segmetrics.json
	run: \|
	coverage run -m unittest discover
	python -m coverage json --omit "tests/*,segmetrics/deprecated.py"
	secrets:
	gist-auth: ${{ secrets.GIST_SECRET }}

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