Migrate to repype #116

	name: Test suite

	on:
	workflow_dispatch:
	pull_request:
	branches: ['develop']
	paths:
	- '.github/workflows/testsuite.yml'
	- 'superdsm/**'
	- 'examples/**'
	- 'superdsm.yml'
	- 'tests/**'
	- 'requirements.txt'

	jobs:

	run_testsuite:
	name: Test suite
	runs-on: gpuagrohr-01
	container:
	image: ubuntu:22.04
	defaults:
	run:
	shell: bash -el {0}

	steps:

	- name: Checkout
	uses: actions/checkout@v2

	- name: Clear cache # otherwise corrupted packages can be reported sometimes
	run: rm -rf /github/home/conda_pkgs_dir

	- name: Install dependencies
	run: apt-get update && apt-get install -y git

	- name: Setup Miniconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	miniconda-version: 'latest'
	channels: conda-forge, bioconda, defaults
	auto-update-conda: true
	auto-activate-base: false
	activate-environment: superdsm
	environment-file: superdsm.yml

	- name: Export the environment
	run: 'conda env export \| grep -v "^prefix: " > superdsm.yml'

	- name: Save the environment as an artifact
	uses: actions/upload-artifact@v4
	with:
	name: superdsm.yml
	path: superdsm.yml

	- name: Run SuperDSM
	run: python -m "unittest"

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