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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 24 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 7 3

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating a predicted segmentation of neural arbors by computing skeleton-based metrics.

    Python 6

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 332 repositories
  • Aind.Behavior.ExperimentLauncher Public

    Source for for a minimal framework that can be used to build experimental interfaces

    AllenNeuralDynamics/Aind.Behavior.ExperimentLauncher’s past year of commit activity
    Python 0 MIT 0 11 (1 issue needs help) 3 Updated Feb 5, 2025
  • AllenNeuralDynamics/dynamicrouting-encoding-io’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 5, 2025
  • AllenNeuralDynamics/dynamicrouting-encoding-pipeline’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Feb 5, 2025
  • AllenNeuralDynamics/iGluSnFR-In-Vivo-MC-Evaluation’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 5, 2025
  • aind-qc-portal Public

    Quality control portal

    AllenNeuralDynamics/aind-qc-portal’s past year of commit activity
    Python 1 MIT 0 13 1 Updated Feb 5, 2025
  • aind-smartspim-quantification Public

    Takes the output of segmentation and ccf registration to calculate cell counts per brain region

    AllenNeuralDynamics/aind-smartspim-quantification’s past year of commit activity
    Python 1 MIT 2 4 0 Updated Feb 5, 2025
  • AllenNeuralDynamics/aind-multiplane-ophys-pipeline-without-splitting’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Feb 5, 2025
  • AllenNeuralDynamics/aind-ophys-oasis-event-detection’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Feb 5, 2025
  • aind-SmartSPIM-segmentation Public

    segmentation module for SmartSPIM cloud pipeline

    AllenNeuralDynamics/aind-SmartSPIM-segmentation’s past year of commit activity
    Python 2 MIT 1 2 0 Updated Feb 5, 2025
  • aind-ccf-registration Public

    Registration of lightsheet whole brain images to the Allen CCF V3 Atlas

    AllenNeuralDynamics/aind-ccf-registration’s past year of commit activity
    Python 3 MIT 4 6 0 Updated Feb 5, 2025