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change file used for probe vis nb
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rcpeene committed Jun 21, 2024
1 parent 5170ed0 commit 37daad7
Showing 1 changed file with 11 additions and 21 deletions.
32 changes: 11 additions & 21 deletions docs/visualization/visualize_neuropixels_probes.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -26,18 +26,7 @@
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"c:\\Users\\carter.peene\\AppData\\Local\\Programs\\Python\\Python39\\lib\\site-packages\\numpy\\_distributor_init.py:30: UserWarning: loaded more than 1 DLL from .libs:\n",
"c:\\Users\\carter.peene\\AppData\\Local\\Programs\\Python\\Python39\\lib\\site-packages\\numpy\\.libs\\libopenblas.FB5AE2TYXYH2IJRDKGDGQ3XBKLKTF43H.gfortran-win_amd64.dll\n",
"c:\\Users\\carter.peene\\AppData\\Local\\Programs\\Python\\Python39\\lib\\site-packages\\numpy\\.libs\\libopenblas.XWYDX2IKJW2NMTWSFYNGFUWKQU3LYTCZ.gfortran-win_amd64.dll\n",
" warnings.warn(\"loaded more than 1 DLL from .libs:\"\n"
]
}
],
"outputs": [],
"source": [
"try:\n",
" from databook_utils.dandi_utils import dandi_download_open\n",
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"metadata": {},
"outputs": [],
"source": [
"dandiset_id = \"000021\"\n",
"dandi_filepath = \"sub-730756767/sub-730756767_ses-757970808.nwb\"\n",
"dandiset_id = \"000253\"\n",
"dandi_filepath = \"sub-637908/sub-637908_ses-1213341633_ogen.nwb\"\n",
"download_loc = \".\""
]
},
Expand All @@ -87,7 +76,7 @@
"name": "stderr",
"output_type": "stream",
"text": [
"A newer version (0.58.1) of dandi/dandi-cli is available. You are using 0.55.1\n"
"A newer version (0.62.2) of dandi/dandi-cli is available. You are using 0.61.2\n"
]
},
{
Expand All @@ -102,8 +91,8 @@
"name": "stderr",
"output_type": "stream",
"text": [
"Ignoring cached namespace 'hdmf-common' version 1.1.3 because version 1.8.0 is already loaded.\n",
"Ignoring cached namespace 'core' version 2.2.2 because version 2.5.0 is already loaded.\n"
"Ignoring cached namespace 'hdmf-common' version 1.6.0 because version 1.8.0 is already loaded.\n",
"Ignoring cached namespace 'hdmf-experimental' version 0.3.0 because version 0.5.0 is already loaded.\n"
]
}
],
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"name": "stdout",
"output_type": "stream",
"text": [
"(1920, 3)\n"
"(2304, 3)\n"
]
}
],
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{
"data": {
"application/vnd.jupyter.widget-view+json": {
"model_id": "f469b1d53fe1485aa6920a56b1d9d7c4",
"model_id": "6ea373dad5e949b58da3a5838e77bf74",
"version_major": 2,
"version_minor": 0
},
"text/plain": [
"CCFWidget(children=(VBox(children=(Viewer(background=(0.85, 0.85, 0.85), camera=array([[ 1.3441567e+03, -2.172…"
]
},
"execution_count": 8,
"metadata": {},
"output_type": "display_data"
"output_type": "execute_result"
}
],
"source": [
Expand All @@ -216,7 +206,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.9.18"
"version": "3.10.8"
}
},
"nbformat": 4,
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