Broad celltype as label

AlexsLemonade · Nov 5, 2024 · 71a4a1c · 71a4a1c
1 parent dc6c7cb
commit 71a4a1c
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/scRNA-seq-advanced/02-dataset_integration.Rmd b/scRNA-seq-advanced/02-dataset_integration.Rmd
@@ -702,7 +702,7 @@ scater::plotReducedDim(merged_sce,
                        point_alpha = 0.2,
                        # Allow for faceting by a variable using `other_fields`:
                        other_fields = "sample") +
-  scale_color_brewer(palette = "Dark2", name = "celltype_broad", na.value = "grey80") +
+  scale_color_brewer(palette = "Dark2", name = "Broad celltype", na.value = "grey80") +
   guides(color = guide_legend(override.aes = list(size = 3, alpha = 1))) +
   ggtitle("UMAP after integration with fastMNN") +
   # Facet by sample
@@ -811,7 +811,7 @@ scater::plotReducedDim(merged_sce,
                        point_alpha = 0.2,
                        # Specify variable for faceting
                        other_fields = "sample") +
-  scale_color_brewer(palette = "Dark2", name = "celltype_broad", na.value = "grey80") +
+  scale_color_brewer(palette = "Dark2", name = "Broad celltype", na.value = "grey80") +
   guides(color = guide_legend(override.aes = list(size = 3))) +
   ggtitle("UMAP after integration with harmony") +
   facet_wrap(vars(sample))