Update docker images and GHA to use miniforge #6
Workflow file for this run
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name: Build Docker image for cell-type-ewings | |
concurrency: | |
# only one run per branch at a time | |
group: "docker_cell-type-ewings_${{ github.ref }}" | |
cancel-in-progress: true | |
on: | |
pull_request: | |
branches: | |
- main | |
paths: | |
- analyses/cell-type-ewings/Dockerfile | |
- analyses/cell-type-ewings/.dockerignore | |
- analyses/cell-type-ewings/renv.lock | |
- analyses/cell-type-ewings/conda-lock.yml | |
- .github/workflows/docker_cell-type-ewings.yaml | |
push: | |
branches: | |
- main | |
paths: | |
- analyses/cell-type-ewings/Dockerfile | |
- analyses/cell-type-ewings/.dockerignore | |
- analyses/cell-type-ewings/renv.lock | |
- analyses/cell-type-ewings/conda-lock.yml | |
- .github/workflows/docker_cell-type-ewings.yaml | |
workflow_dispatch: | |
inputs: | |
push-ecr: | |
description: "Push to AWS ECR" | |
type: boolean | |
required: false | |
workflow_call: | |
inputs: | |
push-ecr: | |
description: "Push to AWS ECR" | |
type: boolean | |
jobs: | |
test-build: | |
name: Test Build Docker Image | |
if: github.event_name == 'pull_request' || (contains(github.event_name, 'workflow_') && !inputs.push-ecr) | |
runs-on: ubuntu-latest | |
steps: | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v3 | |
- name: Build image | |
uses: docker/build-push-action@v6 | |
with: | |
context: "{{defaultContext}}:analyses/simulate-sce" | |
push: false | |
cache-from: type=gha | |
cache-to: type=gha,mode=max | |
build-push: | |
name: Build and Push Docker Image | |
if: github.repository_owner == 'AlexsLemonade' && (github.event_name == 'push' || inputs.push-ecr) | |
uses: ./.github/workflows/build-push-docker-module.yml | |
with: | |
module: cell-type-ewings | |
push-ecr: true |