Remove pygmt library usage because the recent version crashes Jupyter… #290
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Ubuntu tests | |
| on: | |
| push: | |
| branches: [ "pygmtsar2" ] | |
| pull_request: | |
| branches: [ "pygmtsar2" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| Imperial_Valley_2015: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.10", "3.11"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install system dependencies | |
| run: | | |
| uname -a | |
| # prepare system | |
| sudo apt update | |
| # https://github.com/gmtsar/gmtsar/wiki/GMTSAR-Wiki-Page | |
| sudo apt install -y csh subversion autoconf libtiff5-dev libhdf5-dev wget | |
| sudo apt install -y liblapack-dev | |
| sudo apt install -y gfortran | |
| sudo apt install -y g++ | |
| sudo apt install -y libgmt-dev | |
| sudo apt install -y gmt-dcw gmt-gshhg | |
| # gmt-gshhg-full should be installed automatically (it is required to use GMTSAR landmask) | |
| sudo apt install -y gmt | |
| # add missed package | |
| sudo apt install -y make | |
| # vtk rendering | |
| sudo apt install -y xvfb | |
| - name: Compile GMTSAR | |
| run: | | |
| git config --global advice.detachedHead false | |
| git clone --branch master https://github.com/gmtsar/gmtsar GMTSAR | |
| cd GMTSAR | |
| git checkout e98ebc0f4164939a4780b1534bac186924d7c998 | |
| autoconf | |
| ./configure --with-orbits-dir=/tmp CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
| make CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
| make install | |
| - name: Install PyGMTSAR | |
| run: | | |
| # vtk rendering | |
| pip3 install pyvista panel | |
| pip3 install -e ./pygmtsar/ | |
| - name: Run test | |
| working-directory: tests | |
| run: | | |
| export PATH=$PATH:${{ github.workspace }}/GMTSAR/bin | |
| Xvfb :99 -screen 0 800x600x24 > /dev/null 2>&1 & | |
| export DISPLAY=:99 | |
| export XVFB_PID=$! | |
| # remove Google Colab specific commands and add __main__ section | |
| cat imperial_valley_2015.py \ | |
| | sed '/if \x27google\.colab\x27 in sys\.modules:/,/^$/d' \ | |
| | sed 's/^[[:blank:]]*!.*$//' \ | |
| | awk '/username = \x27GoogleColab2023\x27/ {print "if __name__ == \x27__main__\x27:"; indent=1} {if(indent) sub(/^/, " "); print}' \ | |
| > imperial_valley_2015.fixed.py | |
| python3 imperial_valley_2015.fixed.py | |
| - name: Archive test results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Plots (${{ matrix.os }}, ${{ matrix.python-version }}) | |
| path: tests/*.jpg | |
| if-no-files-found: error |